Medicago truncatula (barrel medic): 112421269
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Entry
112421269 CDS
T01716
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
112421269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
112421269
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
112421269
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
112421269
NCBI-ProteinID:
XP_024637997
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Position
1:complement(40128842..40138394)
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AA seq
942 aa
AA seq
DB search
MGVPAFYRWLADRYPLSISDVVEDDDVPSPIDASKPNPNGIEFDNLYLDMNGIIHPCFHP
DGKPSPATYDEVFKLVFDYVDHLFSLVRPRKLLYLATDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEERLRKEFVEEGALLSSKDKPETSDSNVITPGTKFMASLSVALQYYVQTRLNHN
PAWKNIKVILSDSNVPGEGEHKIMEYIRLQRNIPGFNPNTRHCLYGLDADLIMLSLATHE
VHFSILREVITLPGQDKCFVCGQAGHFAADCHGKPETKAEDGNPADEIPIHKKKYQFLNI
WVLREYLQYELEIPNPPFEIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHI
YRKEFTAMGGYLTYAGEVFLDRVEYFIQSVAVHEDQIFQKRVRVQQVAENNEEMRARVRG
VILQEPRASFSDKVKLGEPGYKERYYAEKFGASSLEEIDKVKKDIVLKYVEGLCWVCQYY
YNGVCSWKWYYPYHYAPFASDLKDLPNLEIIFSPGEPFKPFDQLMGVLPASSSNALPDKY
RDLMTDPSSPIFHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKLEDTLTMQEE
EQRRNSVMLDLLYVNRAHDLASHILLYYQVFGRLATHERCVSPINANASSGGMNGYLWAC
ERNVLSSIAPSPIDGLPDIESNQVLNITYLNPCRHGHIPKPPDGVVIPKKIIKDIDIKPS
PVLWHEDNVGRGQQGRERSQVPGAITGSQLGEAAHRLVKNTLNIKWNNTSHGVLEQPPVR
HTTNRFQSAGPSRYGKYSGENTNSYYGEHNHHGAMTRHRYPVSSNAGQVDRQNFRTQDRP
RHQEQFQNVKTGFSALTMEEGLRPAPSRPPISGPTTNLEPRFVQNSGPPVRPLKWNTKAP
INGVYPRRQEAASGVVPHHKQVKKVYQVKTRLPQETPDSGNQ
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccagctttttaccggtggctcgccgaccgttacccactctcaatctccgac
gtagtcgaagacgacgacgttccgtccccaatcgatgcttctaaacccaatcccaacgga
attgagtttgataacttgtacttagatatgaacggtatcattcacccttgttttcatcct
gatggcaagccatcaccagctacttatgatgaagtttttaaattggtatttgattatgtt
gatcatctcttttctttggttcgtccaaggaagcttctttaccttgcaactgatggtgtt
gcaccaagagccaaaatgaatcagcaacgttcccgacggttccgagctgcaaaagatgca
gctgaggctgaagccgaagaggaaaggctgaggaaagaattcgtcgaggagggagcactt
ctgtcttctaaggacaagcctgagacttcagactcaaatgtcattacccctggtactaaa
tttatggcatctctgtcagtggctcttcagtattatgtacagactagattgaaccacaac
cctgcctggaaaaatataaaggttatactttctgattcgaatgttcctggtgagggagaa
cataaaataatggaatacatccggttacaacgtaacattcctggtttcaatccgaatact
cgacattgtttgtatggattggatgctgatttgattatgctctctttagctacccacgag
gttcacttctcaatattgagggaggtaattactttacctggacaagataagtgctttgtg
tgtggccaagctggccattttgcagctgattgtcatggtaagccagaaactaaagctgag
gacgggaatcctgctgatgaaatcccaattcacaagaagaaatatcagtttcttaacatc
tgggtgcttcgtgaatatttgcaatatgaattggagattcccaaccctccttttgagatt
gactttgaacgagtagtggatgattttgtatttctgtgcttctttgttggcaatgacttt
cttcctcatatgccaacattagagatcagagagggagctataaatttactgatgcatata
tatagaaaggaattcactgccatgggtggttatcttacttatgcgggtgaggttttctta
gatagagtagaatattttatccaatctgtcgctgttcatgaagatcaaatctttcagaaa
cgagttcgagttcaacaggtggcagaaaataacgaagagatgagagctagggtaagagga
gtaatacttcaagagccacgggcctcattttctgataaggtcaagttaggggagcctgga
tacaaggaaaggtattatgctgaaaagtttggtgcatcaagtctggaggagattgataaa
gttaagaaagatatagttttgaaatatgtggaaggcctttgttgggtttgccagtattat
tataacggtgtatgctcatggaaatggtactacccgtatcattatgctccttttgcttct
gatcttaaagatctacctaatctagaaataattttttcccccggggagccattcaaacca
tttgatcagcttatgggggtcctgcctgcttcaagttcaaatgcactgcctgacaaatat
agggatttgatgaccgatccttcatcacctatttttcacttctaccctgctgattttgag
attgatatgaatggaaaacgatttgcatggcagggtgttgccaaattgccatttattgat
gagaagaaattgcttgctgccacaaggaagcttgaagacacattaacgatgcaggaggaa
gaacagcgtcggaatagtgtgatgcttgatttgctttatgtcaaccgtgcacatgatttg
gcttcacatattttactgtattaccaagtttttggtcgattagccactcatgaaagatgt
gtttcaccaattaacgcaaatgctagcagtggtgggatgaacggatatctttgggcatgt
gagagaaatgttttgagctctattgcaccgtctcccattgatggattgccagatatcgag
agtaatcaagtcttaaatattacatatctcaatccttgtagacatggacacatcccaaaa
cctccggatggtgtagtgatacccaaaaagataataaaagacattgatatcaaaccttct
cctgtgctatggcatgaagacaatgttggtcggggacagcaaggaagggaaaggtcgcaa
gtacctggagcaataactggatctcaattaggagaagcagctcatcgtcttgtcaagaac
acccttaacattaaatggaataatacatcccacggagtgttggagcaacctccagttcgc
catacaacaaacaggttccaatcagctggaccatctagatatggaaaatattctggcgag
aacactaacagttattatggagaacataatcatcatggcgcaatgactagacatagatat
ccagtctcatctaatgctgggcaggtggacagacaaaattttagaacacaagataggcca
cggcatcaagaacagttccaaaatgtgaagactgggttttctgctttaacaatggaggaa
ggattgagacctgcaccatcgaggccgccaatttctggaccaacaaccaatttagaaccc
cgatttgtgcagaactcaggtcctccagtacgtccactaaagtggaatactaaagcacct
ataaatggagtgtatcctaggcgtcaagaagctgcatctggggtagtgcctcatcataag
caggtaaagaaggtttaccaagttaaaacacgtttgccccaagaaactccagattctggt
aatcaatag
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