Medicago truncatula (barrel medic): 11410061
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Entry
11410061 CDS
T01716
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11410061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11410061
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
11410061
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_23
AAA_29
Arf
AAA
AAA_28
ORC-CDC6-like
Zeta_toxin
AAA_30
Motif
Other DBs
NCBI-GeneID:
11410061
NCBI-ProteinID:
XP_003591234
UniProt:
G7IAA4
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All DBs
Position
1:41567844..41571318
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AA seq
333 aa
AA seq
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MGVNANSDSKPITVEIKELKFTYPGIDGHPPPGSKPLIEHFSLNLFSGDRCLLVGSNGAG
KTTILKILGGKHMVEPEMVRVLGRSAFHDTTLTSSGDLCYLGGEWRRDVAFAGFEVPIQM
DISAEKMIFGVAGIDPARRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFQVLLL
DEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLELAMP
IEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVVGGDPARAP
VRVTNNGWAAGRLHSTIAGEENFLLSSNRVLRG
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttaatgcgaattcagattcaaagccaattacggttgagatcaaagagctgaaa
ttcacttatcctggaatcgacggtcatcctccaccgggttccaaaccgctaattgaacat
ttctctctcaatctcttctccggtgatcggtgccttctcgttggatccaatggcgccgga
aagactacgattctgaagatattaggagggaaacatatggtggaacctgaaatggttcgt
gttcttggaagatctgcttttcatgatactactttaacttcttccggtgatctttgttat
cttggtggtgagtggaggagagatgttgcttttgctggctttgaagttccaatacagatg
gacatttctgccgagaaaatgatatttggtgtggctgggattgatcctgctagaagagca
gagctaattaaggtattagatatcaatctttcatggagattgcataaagtatccgatggt
caaagaagaagagtgcaaatttgtatgggtctcctcaaaccatttcaggttcttcttctg
gatgagataacagttgaccttgatgttctagcaagagctgaccttctgaagtttctaaga
aaggaatgtgatgagaggggtgccactattatatatgcaacacatatatttgacggtctt
gaggattggccaacaaatattgtttatgtagctcatggaaggctggaactagcaatgccc
atagagaaagtcaaagaaactagcaaactatcactaatgagaacagtagaagtttggtta
cggaaggagcgagatgaagatagaagacaaaggaaagaaaggaaggctgctggccttcct
gaatttgataagcaagttgatggaagccgtgtagttggaggggatcctgcacgagctccg
gttcgagttactaataatggctgggctgcaggtcggttacattccactattgccggtgaa
gaaaacttcctcctaagctcaaaccgagttttgagggggtaa
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