Medicago truncatula (barrel medic): 11427226
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Entry
11427226 CDS
T01716
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04075
Plant hormone signal transduction
mtr04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
11427226
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
11427226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
11427226
Transcription factors [BR:
mtr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
11427226
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
bHLH_LHW
NADH_u_ox_C
Motif
Other DBs
NCBI-GeneID:
11427226
NCBI-ProteinID:
XP_039683196
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Position
7:complement(52707218..52712075)
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AA seq
692 aa
AA seq
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MMPLHELYHMSKEKVDHKEMNNSCAPDQSSVPRNDLFELVWQNDQILVHGQSSNSNRAKM
TPTLPSHTLKGHDKYSGQHANETNTRIGKFEDLDNGLNEIITRSVSSSQDEDLMTMMPWL
NCAMDDEHSLHYSSCFVHEPGARTNDFAATNKFSLLDRKSNCIQVFSDSHKQGILSKGSS
LAVEDFDTSELKTSTNQLNMSSLLQQCQPSFESIRFRESGLSENNTKGNANQHAPCEEIS
HVPSSSTVMNFTHFAKPAAIVKANLQNIGFSSSRSERVGAKNKDAAAIGRNPCESSKVDL
SVECPKSSAIHCHQSVEPSRVGLKPLEPKSLEKNTTVSTSACKEDVSKVDQTSNQVLSES
SRKGQEVFKKCTELTVASSSVCSDNGVHRSSDDANQNLKRKNLDSEDSEWHSEDFEDESI
GVKRTDHGRGVTGSKKNRSTEVHNLSERRRRDRINERMRALQELIPNCNKADKASMLDEA
IEYLKSLQLQLQIMSMGGGGLYMPMTLPAGMQHMHAAHMFPFSPMSVAMQMGLGVPQFQG
THLPVAHTSGLAALHGMVRPNPQMFGLQAGQGLHMPMPSASMFSYPGEPVMNSSAVELNA
SGTAGLMETVESASASKLKDQMPKLKDPMPNVNSQVMLNNKGCSSTNQMSIQCEATTGGL
EQSNVVLDSAHALLENDKRDNIEIEIDKSHEL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccctgcatgagttataccacatgtctaaagaaaaagttgatcataaagagatg
aacaattcttgtgccccagatcaatcttctgtacccagaaacgatttgtttgagctggtt
tggcaaaatgaccagattttagtgcatggtcaatctagtaattccaatagagctaaaatg
actccaactttaccatctcatactcttaaggggcatgataaatattcaggacaacatgct
aatgaaacaaatacaaggataggaaagtttgaggatttagataatggtttgaatgaaatt
attacaaggtctgtttcttcaagtcaagatgaagatttgatgacgatgatgccttggttg
aattgtgcaatggatgatgaacactctttacattatagttcttgtttcgtacatgaacct
ggtgccagaacaaatgactttgctgccacaaataaattttctttgcttgatagaaaaagt
aattgtattcaagtatttagtgactctcataaacaagggatcctttccaagggttcttca
cttgcagttgaagattttgatacctctgaactaaaaactagcaccaatcagttaaatatg
tcatcgttgttgcaacaatgtcaaccctcattcgaatcaattagatttagagaatcaggt
ttaagtgagaataatacaaaaggtaatgcaaaccagcatgcaccttgtgaagaaatctct
catgttccatcttcctcaaccgtaatgaatttcacccattttgcaaaacctgcggctatt
gtgaaagctaatcttcaaaacattggtttctcttcatcaagatcagaacgtgtgggagca
aagaacaaagatgcagctgcaataggaaggaatccttgcgaatcatcaaaagttgattta
agtgtagaatgtccaaagagttcagccatacattgtcatcagtcagtggagccatccagg
gttggtttgaaacctttggagccgaaatctcttgagaaaaacactactgtttctacttct
gcttgcaaagaagatgtatccaaagttgatcaaacttccaatcaagttcttagtgagagt
agcagaaaaggtcaagaagtttttaaaaaatgtacggagctaacagtagcctcttcctct
gtttgctctgacaatggcgtgcatagaagttcagatgatgctaatcaaaatttgaagcga
aaaaatctggactctgaggattctgagtggcacagtgaagattttgaggatgaatcaatc
ggtgttaaaagaactgatcatggacgaggtgttacgggctcgaagaaaaatcgttcaacc
gaagtgcacaatctatctgaaaggagacgaagagacaggatcaatgagaggatgcgtgca
ttgcaagaactcataccgaattgcaacaaggcggataaagcttcaatgctggatgaggca
attgagtatcttaaatcacttcaactccaactgcaaatcatgtcaatgggaggtggtggt
ttatacatgcctatgacgttaccagcaggaatgcagcacatgcatgcggctcacatgttt
cccttttcacccatgagtgttgccatgcaaatgggattgggggtgcctcaatttcaagga
actcaccttcctgttgcacatacatctggacttgctgctttacatgggatggtaagacca
aatcctcaaatgtttgggcttcaagctggtcagggactgcacatgccaatgccaagtgct
tcaatgttttcttatcccggagagcctgttatgaactcatcagctgtagaattaaatgct
agtggaacagcaggactaatggaaaccgtggaatcggcttcagcctctaagttaaaggat
caaatgcctaagttaaaggatccaatgccaaatgtgaactcacaagttatgctaaacaac
aagggatgtagctcaacaaatcaaatgtcgatccagtgtgaagcaacaaccggtgggctt
gaacaatcaaatgtggtactcgatagcgcccatgctttgctggaaaatgacaaaagagac
aacattgagattgagattgataaatctcatgagttatga
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