Medicago truncatula (barrel medic): 11429796
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Entry
11429796 CDS
T01716
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
11429796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11429796
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
11429796
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
11429796
NCBI-ProteinID:
XP_003626390
UniProt:
G7L0T7
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All DBs
Position
7:54339591..54349659
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AA seq
956 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI
IHPCFHPDGKPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRR
FRAAKDAAEAEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYI
QTRLNYNPGWRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIM
LSLATHEIHFSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNALDWPVDDTPIHKK
KYQFLHIWVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
VNLLMHIYRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQEFNEG
MRARARGEMPEEPRASVVDKVKLGQPGYTERYYAEKFGASDPEIERIKKDIVLKYVEGLC
WVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSSSS
ALPERYRDLMINPSSPILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLEGT
LTEEEQLRNSKMLDLLYVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNGFL
WSYERNVFRTVVSSPIKGLQDIACNQVLNITYLNPRTHRHIPKPPDGVVMPQKILRALDI
KPLPVLWHEDNSRRHQARERQQVPGAIAGPQLGEAAHRLVRNSLQFNNNTSYPDQFPSQH
TMNRVRPTGASGSGKYYGEESSGYYGQNYNPQGMMTRPRFPIASNGWQNDRQNIRIQDRS
QHHEQFHNMKTGFQALTIDEGVRPRSSAVPSPKTPAMMLMRPQNSGHTTNLQPQFVQNIG
PPIPPPNWISKAPDTNGMYARHQEAAVGGAYDKPIKKVYQIKTRNPQDMPEQGNQW
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggatcgatacccgcgatctattgtcgac
gtcgtggaggaagcaccttccccctccgtcgccggcggtcctccgtttcccgttgatgta
tcaagacctaatcccaacggcatggagttcgataacttgtacttagacatgaacggcatc
atccacccttgttttcatcccgacggcaagccagcacctgctacctatgatgatgtattt
aaatcaatgtttgactacatcgaccatctcttttcattggttcgaccaaggaagcttctt
tatcttgcaattgatggtgttgcaccaagagccaaaatgaaccagcaacgttctcgccgt
tttcgagccgcaaaagatgcagctgaggctgaagctgaagaggaaaggcttaggaatgaa
tttgctgatcagatagaacttttgacttccaaagaaaaaaccgagactcatgactcaaat
gtcattactcctggcactccgtttatggcagtgctgtcggtggcacttcagtattacata
caaactagattgaattacaacccgggctggcggaatactaaggtcatgctttctgattca
aatgttcctggcgagggagaacataaaataatggattatattcgattacagcgtaacctt
cctggtttcgatccaaatactcgacactgtttgtatggattggatgctgatttgattatg
ttgtccttagctacacacgagattcatttttcaatattgagagaggtaataacttttcct
ggacaacaagagaagtgttacatgtgtggccaagttggccatcttgcagctgagtgtcgc
ggtaagccaggtgataatgctttggactggcctgttgacgatactccaattcacaagaag
aaatatcagtttcttcacatttgggtgctgcgtgaatatttgcaatatgaattgttgatt
cctgaccctccgtttgagatcgactttgagcgcatagtagatgattttgtgtttctatgt
ttctttgttggcaatgactttcttccgcatatgccaacattagagatacgtgagggggct
gtgaatttattgatgcatatctatagaaaggaattcactgccatgggtggttatcttact
gatgcgggtgaggttttcttagagagagtggagaatttcattcagtgcgttgctgttcat
gaagaacaaatatttcagaaacgagttcggattcagcagtctcaagaattcaatgaaggg
atgagagctagagcaagaggagaaatgcctgaagagccacgtgcctcagttgtagacaag
gttaagttaggacagcctggatacacggaaaggtattatgccgaaaagtttggtgcatca
gatccagagattgagagaattaagaaagatatagtcttgaaatatgtagaaggcctttgt
tgggtttgccggtattactatcagggtgtctgctcgtggcagtggtattacccgtaccat
tatgctccttttgcttctgatcttaaagatttggctgatctggaaataactttttttatg
ggagaaccatttagaccatttgatcagctcatggggactctaccctcttcaagttcaagt
gcactacctgaaagatatcgtgatttgatgattaatccttcatcgcctattcttcaattc
tatccttctgattttgagattgatatgaatggcaaaaaatattcctggcagggtgttgcc
aagctgccgttcattgatgagaagaagttgctttctgccacaaggacacttgaaggcaca
ttaacggaggaggaacagctccgaaatagtaagatgcttgatttgctttatgtcagccgt
gcacataagttggttccacatatcttattctattaccaaaattatagtcatttgcctcat
caacaaagacctgttctgccaattgacccaagtgctagtgatggtatgaatggatttttg
tggtcatatgaaagaaatgtgttcagaaccgttgtatcttctcccatcaaaggcctgcag
gatatcgcgtgtaatcaagttttaaatattacttaccttaatcctcgcactcataggcat
atcccaaaacctccggatggtgtagtaatgccccaaaagatattacgagcccttgatatt
aaacctctgcctgtgttatggcatgaagacaatagtaggcggcatcaagccagagaaaga
caacaggtacctggagcaattgccggtcctcaactaggagaagcagctcaccgtcttgtc
agaaactcccttcagttcaataataatacatcctatccggaccagtttccaagccagcat
acaatgaacagggtcagaccaactggagcctctggatctggaaaatattacggtgaggaa
tcaagtggttattatggacaaaattacaatccccagggcatgatgaccaggcctagattt
ccaatagcgtctaatggttggcaaaatgacagacagaatattaggatacaagataggtca
cagcatcatgaacagttccacaacatgaaaactggattccaagctttgaccatagatgaa
ggtgtgagacctaggtcatctgcagtgccttcaccaaaaacacctgcaatgatgttaatg
aggccgcaaaattcagggcacacaaccaatctacaaccccaattcgtccagaacattggt
cctcctattccacctccaaattggattagtaaagctccagatacgaatggaatgtatgct
agacatcaagaagctgcagtagggggagcttatgataaacccatcaagaaggtgtaccaa
attaaaactcgtaatccccaagatatgccagagcaggggaatcaatggtga
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