Microbacterium testaceum: MTES_3291
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Entry
MTES_3291 CDS
T01423
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mts
Microbacterium testaceum
Pathway
mts03030
DNA replication
mts03410
Base excision repair
mts03420
Nucleotide excision repair
mts03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTES_3291 (ligA)
03410 Base excision repair
MTES_3291 (ligA)
03420 Nucleotide excision repair
MTES_3291 (ligA)
03430 Mismatch repair
MTES_3291 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mts03032
]
MTES_3291 (ligA)
03400 DNA repair and recombination proteins [BR:
mts03400
]
MTES_3291 (ligA)
Enzymes [BR:
mts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTES_3291 (ligA)
DNA replication proteins [BR:
mts03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTES_3291 (ligA)
DNA repair and recombination proteins [BR:
mts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTES_3291 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTES_3291 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTES_3291 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTES_3291 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BAJ76255
UniProt:
E8NDI9
LinkDB
All DBs
Position
3560277..3562709
Genome browser
AA seq
810 aa
AA seq
DB search
MTEHDQLPDLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRH
PELQGQDSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKTEAAAGRAVHWL
SELKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGEGHPPIVEVR
GEVFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAARRFPAFANP
RNAASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEIYDLLASWGL
PTSPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWAI
AYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQDVVKVKGVLI
GDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPECGTPLRPAKEGDIDLRCPNAR
SCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQPEVPERPPLDTEAGLFDLTVEQLVPI
EVVVRDSETGERKVDPETGELVRRAPFQKLGPASYPPGAENLDPAERRRRGIRKDYREVL
PSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPVAARALAQWFGSLDAIRAATREELAA
VEGVGGIIADAVIDWFEVDWHREIVETWSRAGVRFSIPGHPGPGAAAAAGGVLAGLTVVA
TGSLDGYTREGAQEAILAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGLRILDAAQF
RILVEQGPGALDGVGSDGSGEDEPATPSVE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagcacgatcagcttcccgacctcagcctcgatgacgcgcgcgcagaggccatc
gacctgacgcagcgcatcaccgacgcgcgcgaggcctactacgggcgggacgccgagctc
gtcgacgatgcgacctatgacggatggatgcatcggctcgaggctctcgagcgccgccac
cccgagttgcaggggcaggacagcccgacgctgtccgtcggcgcggccgaggcgacggac
ctggcgacgatcgaacacgccgagcgcatgctgagcctcgacaacgtcttctcgcccgac
gagctgcgcgattgggcggtcaagaccgaagcagccgcgggccgcgcggtgcactggctc
agtgagttgaagatcgacggcctcgcgatcagcctgcggtacgagaacggtgtgctgacc
tcggcggcgacccgcggtgacgggcgcgtcggcgagatcgtcacggagaacgccctgcgt
ctcgcggacgtgccccgcgagctcgggggggaggggcaccctccgatcgtggaggtccgc
ggcgaggtcttcatccccgtcgcgaagttcgagaacctcaaccgtctgcagggcgagtac
cgggaccgggctgtcgccgaggcgcgggagcgtcacgccggtcgtcgcgccggccgcccc
ttcgacgaagagaaggccgagcaggcggccgcgcgacgcttccccgccttcgccaacccc
cgcaacgccgcgagcgggggcctgcgccagcagatcgacaagaagacgggtctcgagctc
gaggccggcctcgcgcgcatcgagtcgctctccctctacgtgcacggcatcggcgcctgg
cccgacccgccggtcgctgcccagagcgagatctacgacctccttgcttcgtgggggctg
cccacctcgccttacagccgcgtcgagtcgagcatcgacggcgtcctctcgttcgtcgcg
cattacggcgagcaccggcacgacgtcgagcacgagatcgacggcgtggtcgtcaaagtc
gacgagcttgcgcttcacgacgagcttggggcgacgagcagggctccgcgctgggcgatc
gcgtacaagtacccgcccgagcaggtgaacacgaagctgctcgacatcgtcgtctcggtg
ggccgcacagggcgagcgacgccgttcgccgtgatggagccggcgaaggtggccgggagc
gtcgtccgccaggccaccctgcacaaccaggacgtcgtgaaggtgaagggtgtcctcatc
ggcgacaccgtcgtcctgcggaaggccggagacgtcatccccgaggtcctcggacccgtc
gtggaactgcgcgacggcaccgaacgcgcgttcgtcatgcccgcggactgtcccgagtgc
gggacaccgctgcgacccgcgaaagagggcgacatcgaccttcggtgtcccaacgcacgg
tcgtgccccgcccaggtccgcgggcgcgtggaacacatcggctcgcgcggcgcgctcgac
atcgaggcgctcggtgaggtcaccgccgccgcgctgacgcagcccgaagtgccggagcgc
ccgcccctcgacaccgaggcgggcttgttcgacctcaccgtggagcagctcgtgccgatc
gaggtcgtggtccgcgactccgagacgggcgaacgcaaggtcgatccggaaacgggcgag
ctcgtacgacgtgccccgttccagaagctcggtcccgcatcgtatccgccgggtgccgag
aacctcgatccggcggaacgacgacgccgcggcatccgaaaggactaccgcgaagtgctc
ccgtccgagcaggcgacgaagctcgtcgccgagctcgagaaggcgaagacgaaagacctg
tggcgcctgctggtctcgctcaacatccgccacgtcggtcccgtggcggcgcgcgcactc
gcgcagtggttcggatctctggatgccatccgcgcggcgacgcgagaggagctcgccgcg
gtcgagggtgtgggcggcatcatcgccgacgcggtgatcgactggttcgaggtggactgg
caccgggagatcgtcgagacctggtcccgcgcgggcgtgcggttctccatcccggggcac
ccgggtccgggagcggcggcggccgcgggcggcgttctcgcggggctcaccgtggtggcc
acggggtcgctcgacggctatacccgcgagggcgcgcaagaggcgatcctcgccgcggga
ggcaaggcggcctcgagcgtctcgaagaagaccgacttcgtggcggccggaccgggtgcc
ggctcgaaactcgcgaaggccgaggagctgggcctgcggatcctggatgccgcgcagttc
cgcattctcgtcgagcaggggccgggcgccctcgacggggtggggtcagatggatccggt
gaagacgagccggcgacgccctcggtcgagtga
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