Marivirga tractuosa: Ftrac_0818
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Entry
Ftrac_0818 CDS
T01365
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtt
Marivirga tractuosa
Pathway
mtt03030
DNA replication
mtt03410
Base excision repair
mtt03420
Nucleotide excision repair
mtt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ftrac_0818
03410 Base excision repair
Ftrac_0818
03420 Nucleotide excision repair
Ftrac_0818
03430 Mismatch repair
Ftrac_0818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtt03032
]
Ftrac_0818
03400 DNA repair and recombination proteins [BR:
mtt03400
]
Ftrac_0818
Enzymes [BR:
mtt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ftrac_0818
DNA replication proteins [BR:
mtt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ftrac_0818
DNA repair and recombination proteins [BR:
mtt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ftrac_0818
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ftrac_0818
MMR (mismatch excision repair)
DNA ligase
Ftrac_0818
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ftrac_0818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
HNOB
HHH_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADR20820
UniProt:
E4TSK0
LinkDB
All DBs
Position
complement(1006485..1008500)
Genome browser
AA seq
671 aa
AA seq
DB search
MEKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTSDSP
SQRVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGEESYEYFCELKFDGV
AISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGEVFLPRE
AFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYAGEDLPIDSHEE
GIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLGQQEQLG
FTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVKRASLHNA
NEIARLDLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVEYIQECPECGTELVRAEGE
AVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERTIHLLYEKGLVKNVADLYDLKYED
VFELEGFKDLSTQNLLKGIEESKQIPFENILFGLGIRFVGKTVAEKLGAHFKNIDNLAKA
SFDELIEVPEIGERIAQSVVEYFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNVLENKS
LVVSGVFEHYGRDEIKEVIKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIID
EVEFRSLIKEN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaagcagccgaacaaaagattcaggagttaagtgaaaagcttcattattat
aactataaatactatcaggaaagtgtttctgaaatttctgattatgagtttgatatgatg
ttaaaggagctcatcgaattggaggagaagtttcctgatttgaaaacttccgattctcca
agccagcgagtaggaggtgatatcaccaaaaatttcgaaacggtagagcataaaattcca
atgctttcattaggtaatacatactccaaagaggaattggatgattttgacggtagggta
aaaagaggtttaggtgaagaaagttatgagtatttttgtgaattgaaatttgatggtgta
gctataagtttgcattatgaaaacggtaaattaattcgaggagtaacccgtggagatgga
agtaaaggagatgatattaccaataatgccaaaaccatccgaactattcccctgaaagtg
agaggtgagcaattccctgagtattttgaagctcgtggagaagtctttttaccccgcgaa
gctttcaatgaaatcaatagagaaagagaagaaaatggagaagccttattggcaaaccca
agaaatgcggcttccggaaccttgaaaatgcaggattctggagttgttgccaaaaggaaa
ttggattgctttttatattcttatgctggtgaagatttgcctatagattcccatgaagaa
ggcattaagcaattggagaaatttggctttaatgtctctcagacctataaaaaatgcaaa
aatataaatgaagtattcaatttcattaatgaatgggaagaaaaaagacattcattgcca
gtggatacggatggaatcgtcataaaagtcaatagtctgggacaacaggaacaattagga
ttcactgctaaaagtccacgctgggcaattgcttacaaatacaaagcagaaagttctaca
acaattttaaaggagattacttatcaggtaggaagaacaggagcagtaactcctgttgcc
aatctggaacccgtttctttggctggaacaaccgtaaaaagagcttctcttcataacgcc
aatgaaattgctcgactggatttaagagttggggatactgtgcatgttgaaaaaggcgga
gaaattattccgaaaatcaccggagtggatttgaccaaaagagatttaggaagtaatgaa
gttgaatatattcaggaatgcccagaatgtggaactgaattggtaagagctgaaggagaa
gcggttcattattgtcctaataaaaagggctgtccaccacaaatcaaaggctcaatcgaa
cattatattcagcgaaaagctgctgatattgattctatgggcgagcgcactattcattta
ttgtatgaaaaaggattggttaagaatgtagctgatctttatgatttgaaatatgaggat
gtttttgaattagaaggctttaaggatttaagtacccaaaacctactaaagggaattgag
gaatctaagcaaatcccatttgagaatatactgtttggactaggcattcgctttgttggg
aaaaccgtggccgaaaaacttggagctcatttcaaaaatattgacaatttagcgaaggct
tcctttgatgaattgatagaagttcctgaaattggcgagcgaattgcgcaaagtgttgta
gaatactttcatgatgaagataatattaaactaattgaacgtttgaaatcggctggattg
caatttgaaattcaggaaactgtgattgagcaaaaaggtaatgtattggaaaataagtct
ttggtggtctcaggcgtatttgaacactacggtagagacgaaatcaaagaagtgattaag
caatatggcggcaaagtagtttcggctatttcaggaaaagtagatatattagtggctgga
gagaatatggggcctgctaaactacaaaaagctgaaaaattgggagtcaagattatcgat
gaagttgaatttcgtagcctgataaaagaaaactaa
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