Methylosinus trichosporium: CQW49_01055
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Entry
CQW49_01055 CDS
T05155
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtw
Methylosinus trichosporium
Pathway
mtw03030
DNA replication
mtw03410
Base excision repair
mtw03420
Nucleotide excision repair
mtw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CQW49_01055
03410 Base excision repair
CQW49_01055
03420 Nucleotide excision repair
CQW49_01055
03430 Mismatch repair
CQW49_01055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtw03032
]
CQW49_01055
03400 DNA repair and recombination proteins [BR:
mtw03400
]
CQW49_01055
Enzymes [BR:
mtw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CQW49_01055
DNA replication proteins [BR:
mtw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CQW49_01055
DNA repair and recombination proteins [BR:
mtw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CQW49_01055
NER (nucleotide excision repair)
GGR (global genome repair) factors
CQW49_01055
MMR (mismatch excision repair)
DNA ligase
CQW49_01055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CQW49_01055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ATQ66638
UniProt:
A0A2D2CV54
LinkDB
All DBs
Position
219851..221992
Genome browser
AA seq
713 aa
AA seq
DB search
MSADNVRPSPRKRGERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEY
DALRQRYEALEKAFPELGGDASLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFV
ARVRRFLNFSDAAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLE
EIPQRLRGDVIPEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPN
VTASRPLRFFAYGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIE
ALRATLGYDIDGVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRT
GALTPIARLEPVTVGGVVVSNATLHNEDEIARKDIRIGDTVVVQRAGDVIPQIVEVVLDK
RPEGATPYVFPHECPACGSAALREIDEKGVEDVVRRCTGSLVCPAQAIERLKHFASRNAM
DIEGLGDKQIEYFFTDGLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLFAAIDAR
RTVPINRFLYALGIRHVGETNARRLARHFPDFASLRDTAREAAPGSEARERIESIEGIGG
VVAEALHDFFAEPHNEREIDALLAHVSLEPMPTIENASPVAGKTVVFTGALERLTREEAK
AQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWFTRTGQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacaacgtccgtccctctccccgcaagcgaggcgaaagagaacgccctccc
gtggcagagctgtctccacgccgcgccaagctcgagcattcgaggctcgccgaggagatc
gccgaatatgaccggcgctattatcaggaggatgatccggcgatctcggacgccgaatat
gacgcgctgcgccagcgctatgaggcgctcgaaaaagcctttcccgagctcggcggagac
gcctcgctgacgaagacggtcggcgccgcgccggcggagaaattcgccaagatcaggcat
gtcgtgcgcatgctctcgctcggcaacgtcttcgccgacgaggaggtccacgaattcgtc
gcgcgcgtgcggcgcttcctcaatttctccgacgcggcgccgctgctgttcaccgccgag
ccgaagatcgacggcctctcctgctcgctgcgctatgagaagggcgagctcgtctccgcc
gcgacgcgcggcgacggcgaggagggcgaggacatcaccgcaaatattcgcacgctcgag
gaaatcccgcagcgtctgcgcggcgacgtgatccccgaggtgctggagatccgcggcgag
gtctatatgcgccgcgaggattttttcgcactcaaccagcggcaggcggaggcgggcaag
ccgctgttcgccaatccgcgcaattccgccgccggctcgctgcgccagctcgatcccaat
gtcaccgcgagccggccgctgcgcttcttcgcttatggctggggcgaggtcagcgtgatg
ccggcggacacgcaattgggcatggtgcaggccttcgcgtccttcggcctcgccaccaat
ccgctgacgcagctctgcggaagcgccgaggagctgctcgctcattatcgaaacatcgaa
gcgctgcgcgcgacgctcggctatgacatagacggtgtcgtctacaaggtcgacgacatc
ggcctgcaaatccgcctcggcttcgtctcgcgcgcgccgcgctgggcggtggcgcataaa
ttcccggccgagcaggcgaagaccattgtccgcgacattgagatcaatgtcggccgcacc
ggcgccttgacgccgatcgcgcggctggagccggtgaccgtcggcggcgtcgtcgtctcc
aacgccactctgcacaatgaggacgagatcgcccgcaaggacattcgcatcggcgacact
gttgtggtgcagcgcgccggcgacgtcattccacagatcgtcgaagtggtcctcgacaag
cggccggaaggcgcgacgccctatgtgtttccgcacgagtgtccggcctgcggctcggcg
gcgctgcgcgagatcgacgagaagggcgtcgaggacgtcgtgcgccgctgcaccggctcg
ctggtctgcccggcgcaggcgatcgagcgcctgaagcatttcgcctcgcgcaacgccatg
gacatcgaagggctcggcgacaagcagatcgaatattttttcaccgatgggcttgtgcgc
accgcctccgagattttcacgctcgccgagcgcgaccgcgccagcctgacgaagctcgag
aacaaggagggctatggcgagacctcggtgcgcaatctgttcgcggcgatcgacgcgcgg
cgaaccgttccgatcaatcgcttcctctatgcgctcggcattcgccatgtcggcgagacc
aacgctcgtcgcctcgcgcgccatttccccgatttcgccagcctacgcgacactgcgcgc
gaggcggcgcccggcagcgaggcgcgcgagcgcatcgaatcgatcgaaggaatcggcggc
gtcgtcgccgaggcgctgcatgatttcttcgccgagccgcacaatgagcgcgagatcgac
gctctgctcgctcatgtgagcctcgagcctatgccgaccatagagaacgcttcgcccgtt
gccggcaagacggtggtgttcaccggcgcgctcgagcggctgacgcgcgaggaggcgaaa
gcccaggccgagcgcttcggcgccaagatttccggctcggtttcgaagaagacggacctc
gtcgtcgctggtccgggcgccggctcgaagctcgcaaaggccaaggaactcggggtggaa
gtgatcagcgaggaggagtggttcacccgcaccgggcaatga
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