Mucilaginibacter xinganensis: MuYL_3993
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Entry
MuYL_3993 CDS
T05010
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
muc
Mucilaginibacter xinganensis
Pathway
muc03030
DNA replication
muc03410
Base excision repair
muc03420
Nucleotide excision repair
muc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
muc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MuYL_3993
03410 Base excision repair
MuYL_3993
03420 Nucleotide excision repair
MuYL_3993
03430 Mismatch repair
MuYL_3993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
muc03032
]
MuYL_3993
03400 DNA repair and recombination proteins [BR:
muc03400
]
MuYL_3993
Enzymes [BR:
muc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MuYL_3993
DNA replication proteins [BR:
muc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MuYL_3993
DNA repair and recombination proteins [BR:
muc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MuYL_3993
NER (nucleotide excision repair)
GGR (global genome repair) factors
MuYL_3993
MMR (mismatch excision repair)
DNA ligase
MuYL_3993
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MuYL_3993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
RNA_ligase
Auto_anti-p27
Zn_ribbon_NUD
Dna2
HHH
Motif
Other DBs
NCBI-ProteinID:
ASU35878
UniProt:
A0A223P224
LinkDB
All DBs
Position
4239431..4241452
Genome browser
AA seq
673 aa
AA seq
DB search
MSPAEAKTRIASLSSELKQHNYNYYVLAMPTIADFDFDKKLEELNALEKEFPEFLDPDSP
TQKVGGDITKEFETVRHRWPMLSLGNTYNEQELLDFDQRIRKAIGDNFEYVCELKFDGLS
MSLTYENGSLVRAVTRGDGIQGDDVTTNVRTINTVPKRLKHSGYPDQFEIRGEVFMHLKA
FERLNNERLENGELQYANPRNFASGTIKMQDSAEVARRPLDCFMYFLYTEKLLFKTHWES
LQAVKSWGFHTNENSRLCGTIEDVFKFITYWDKNRFGLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAIAYKYKAEQVQTELLAVTYQVGRTGAVTPVANLKPVQLAGTTVKRATLHNAD
EIEKRLKLHEHDWVFVEKGGEIIPKIISVNLDKRDPSAKPIRYIAHCPVCGTALIRKEGE
AASYCPNEEGCQPQIVGKMQHFISRKAMNIDGLGDETIETLYQNKFISHISDIYGLNAHS
EELKKMGRFGEKSINNMLEGIEKSKTMPFEKVLFGLGIRYVGETVARKLAAHFKNIDNLA
AASFDELITAEEIGERIALSILEYFSDEGHKAEIQKLKDYGLQFITVEKEVNLASEKLSG
MSFIISGVFEKYSRDELKDIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKAQKLNIPI
ISDAELFKMIEII
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccggccgaagcaaaaacccgaatagcatctctttcatcagaattaaaacagcac
aattacaattattatgtgctggcaatgcctactattgccgattttgattttgataaaaaa
ctggaagaactgaacgcactggaaaaggagtttcctgaatttcttgaccccgattcacct
acccaaaaggtaggcggcgatattaccaaagaatttgaaaccgttaggcaccggtggcca
atgctgtcattaggcaacacgtataatgagcaggaactgcttgattttgaccagcggatc
cgcaaggccataggtgataattttgagtatgtgtgcgaattaaagttcgacggcctgtcc
atgagccttacttacgaaaacggcagcctggttagggccgttacccgcggcgacggcatc
cagggcgatgatgtaactaccaacgtccgcaccatcaacaccgttcccaaacgactcaaa
catagcgggtatcccgaccagttcgagatcaggggcgaggtatttatgcacctgaaagct
tttgaacgcttaaataacgagcggcttgaaaacggcgaattgcagtatgccaacccgcgc
aactttgcatctggcactataaaaatgcaggattcggccgaggtggcgcgccgtccgctg
gattgcttcatgtatttcctgtacaccgaaaaacttttgtttaaaacccattgggaaagc
ctgcaggccgtaaaaagctggggctttcataccaacgaaaacagcaggctttgcggaacc
attgaagacgtttttaaattcattacctattgggacaaaaaccgctttggtttaagctac
gatattgacggcatagtaataaaggtaaacagttacgcccaacaacaggagcttggcttt
acagccaaatccccgcggtgggccattgcatacaaatacaaggccgagcaggtgcagacc
gagctgctggcggtaacctaccaggttggccgtaccggcgcggttacgcccgttgccaat
ttaaaaccggtacagcttgccggcactaccgttaagcgcgccaccctgcacaatgccgat
gaaattgaaaaacgccttaaactgcatgagcatgattgggtgttcgtagaaaaaggcggc
gagatcatccccaagatcatcagcgtaaaccttgacaagcgcgacccgtcggcaaagccg
atccgttacattgcccattgcccggtttgcggcacggcgctcatccgcaaagaaggcgaa
gcggcctcctactgccctaacgaagaaggctgccagccgcagatagttggaaaaatgcag
catttcatcagccgcaaagccatgaatattgacggactgggcgacgaaaccattgaaacc
ctgtatcaaaataaattcatcagccatatcagtgatatttacggccttaacgcacacagt
gaagaactgaaaaagatggggcgctttggcgaaaagtccattaacaacatgctggagggc
attgaaaaatcaaagacaatgccttttgaaaaagtattgttcggcctcggcatccgatat
gttggcgaaaccgtagccaggaagcttgccgcccactttaaaaatatcgacaaccttgct
gcggcatccttcgatgagttgatcacagccgaagaaattggtgaacgtattgccctgagc
attcttgaatattttagcgatgagggccataaagccgaaattcaaaagctaaaagattat
ggcctgcagtttattaccgttgaaaaagaagtaaacctggcgagtgaaaaactgagcggc
atgtctttcatcatctccggtgtttttgaaaagtattcgcgcgatgagcttaaagacatt
atagaacaaaacggcggaaaaatattgagcagcatctcggctaaactcaattacctggta
gcaggcgataacatgggcccggctaagttagagaaagcccaaaagctaaacattcctatc
atcagcgatgcggagttgtttaaaatgattgagataatttaa
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