Mucilaginibacter celer: HYN43_018545
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Entry
HYN43_018545 CDS
T05668
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03030
DNA replication
muh03410
Base excision repair
muh03420
Nucleotide excision repair
muh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYN43_018545 (ligA)
03410 Base excision repair
HYN43_018545 (ligA)
03420 Nucleotide excision repair
HYN43_018545 (ligA)
03430 Mismatch repair
HYN43_018545 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
muh03032
]
HYN43_018545 (ligA)
03400 DNA repair and recombination proteins [BR:
muh03400
]
HYN43_018545 (ligA)
Enzymes [BR:
muh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYN43_018545 (ligA)
DNA replication proteins [BR:
muh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYN43_018545 (ligA)
DNA repair and recombination proteins [BR:
muh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYN43_018545 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN43_018545 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYN43_018545 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYN43_018545 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
RNA_ligase
Auto_anti-p27
DUF1266
Motif
Other DBs
NCBI-ProteinID:
AYL97183
UniProt:
A0A494W0B2
LinkDB
All DBs
Position
complement(4560499..4562511)
Genome browser
AA seq
670 aa
AA seq
DB search
MSSAEAKKQIEALTAELKQHNYNYYVLAMPTISDFDFDKKLEQLNKLEKEYPEYADPDSP
TQKVGGDITKEFVTVRHRWPMLSLGNTYNAQELLDFDQRIRKAIGDNFEYVCELKFDGLS
MSLTYEDGKLIRAVTRGDGVQGDEVTTNIKTIHTIPKRLHGEGYPAYFDIRGEVFMHRKA
FERLNNERIEAGELAYANPRNFASGTVKMQDSAEVAKRPLDCFLYFLYTEKPLFKTHWES
LQEVSKWGFHTNNHSELCPDINCVLEFINKWDQERFNLSYDIDGIVIKVNNYSQQQELGF
TAKSPRWAISYKFKAERVETELLEVSYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIIRLDLHEGDTVFVEKGGEIIPKIISVNPDKRKADALPVVYRTTCPACDTPLERKEGEA
AFYCPNDEGCPPQIVGKMQHYIGRKAMNIDGLGDETIETLYSKGFISHISDIYELHNRAA
DLKRMERFGEKSISNMLDGIEASKKMPFEKVLFGLGIRYVGETVARKLAFHFKSIDNLMA
AGIEELTAAEEIGERIAQSITEYFAGDVHREEIEKLRAQGLQFVAEEKEVVLASDTLVGK
TFIISGTFEKFSRDELKDMIEQNGGKILSSISAKLNYLVAGDNMGPSKLEKATKLNIPII
SDDELLEMIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagcagaagcaaaaaaacaaatcgaggcactaaccgccgaacttaaacagcac
aattacaactactacgtgctggccatgcctaccatatccgactttgattttgataagaaa
ctggagcagcttaacaaactggagaaggaataccccgaatatgccgaccctgattcgcca
acgcaaaaggtgggcggggatattaccaaagagtttgttaccgtaaggcaccgctggcct
atgctctcgctgggcaatacttacaacgcgcaggaactgcttgattttgaccagcgcatc
cgcaaggccatcggcgataattttgagtatgtgtgcgaacttaagtttgatggcctgagc
atgagccttacctacgaagatggcaagctaatccgcgccgttacccgtggcgatggcgtg
cagggcgacgaggtaaccaccaatattaaaaccatccataccatacccaaacgcctgcac
ggcgaaggctacccggcttattttgatatccgcggcgaggtgtttatgcaccgcaaggcc
tttgagcgccttaacaacgagcgtattgaagcgggcgaactggcttatgccaaccctcgt
aactttgcatcgggcacggtaaaaatgcaggattcggccgaggtggccaaacgcccgctt
gattgcttcctgtactttttatataccgaaaagcctttgtttaaaacccattgggagagt
ctgcaggaagttagcaaatggggttttcataccaataatcacagcgaactttgccccgat
attaactgcgtactggagtttattaataaatgggatcaggagcgctttaacctgagttat
gatattgatggcatagttatcaaggtaaataactattcgcagcagcaggaattaggtttc
acagccaaatcgccgcgctgggccatctcctacaaatttaaagccgagcgtgtagagacc
gaactgctggaggtgagttaccaggtaggccgtaccggagccgttaccccggttgcaaat
ttaaagccggtgctgctggccggcaccaccgtaaaacgtgcaacattgcataatgccaac
gaaattatcaggcttgatttacacgagggcgataccgtttttgttgaaaagggcggcgag
attatcccgaagatcatcagcgtaaatcctgataaacgcaaggccgatgcgttgccggtt
gtttaccgcaccacctgcccggcttgtgataccccgttagagcgcaaggaaggtgaagct
gctttttattgccccaacgatgaaggctgcccgccgcaaatagttggtaaaatgcagcac
tacattggtcgtaaagccatgaatattgatggtttgggtgatgaaaccatcgagacactt
tacagtaaaggttttataagccacatcagcgatatttacgagctgcataaccgcgccgcc
gacttgaagcggatggagaggtttggcgaaaaatcaatcagcaacatgctggatggtatt
gaagcttcaaagaaaatgcccttcgaaaaagtcctgtttggtttaggcattcgttatgtg
ggtgaaacggttgcccgtaagctggcttttcactttaaatcgatagataatttgatggct
gccggcattgaagagcttaccgccgccgaagaaataggcgaacgcattgcccaaagcatc
accgagtattttgcgggtgatgttcaccgtgaagaaattgaaaagctgcgtgcacagggc
ctgcagtttgttgccgaagaaaaggaagttgtactggccagtgatacgttggttggtaaa
acgtttatcatctcgggcacattcgaaaaattttcgcgcgatgagctgaaggacatgatt
gagcagaacggcggtaaaatattgagcagtatttcggccaagttgaattacctggtagcg
ggcgataatatgggcccctcgaagcttgagaaggccacaaagcttaacatccccattatt
agcgatgatgaattattggagatgataaaataa
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