Pseudoduganella umbonata: FCL38_08840
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Entry
FCL38_08840 CDS
T06138
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03030
DNA replication
mum03410
Base excision repair
mum03420
Nucleotide excision repair
mum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCL38_08840 (ligA)
03410 Base excision repair
FCL38_08840 (ligA)
03420 Nucleotide excision repair
FCL38_08840 (ligA)
03430 Mismatch repair
FCL38_08840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mum03032
]
FCL38_08840 (ligA)
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_08840 (ligA)
Enzymes [BR:
mum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCL38_08840 (ligA)
DNA replication proteins [BR:
mum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCL38_08840 (ligA)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCL38_08840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCL38_08840 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCL38_08840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCL38_08840 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QCP10525
UniProt:
A0A4P8HQA8
LinkDB
All DBs
Position
complement(2182206..2184548)
Genome browser
AA seq
780 aa
AA seq
DB search
MNEELQSPAGRAAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFAELQRLEEEHPELAQPD
SPTQRVGAPPLGQFAAVTHAVPMLSLNNGFTDEDIENFDRRVREGLDVLQVDYAAELKFD
GLAINLRYENGVFVQAATRGDGYTGEDVSANIRTIKSIPLRLRGDDLPEVLEVRGEVLMF
KADFAAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAQRRLRFFAYGIGELVGADMPE
THSGLLDWYAALGLPVNQERAVVRGYDGLLAFYERIGKARPAMAYEIDGVVYKVNRVEDQ
RTLGFRSRAPRFALAHKFAAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNAT
LHNEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLEKRPTPEPAAYVLPNTCPVCGSHVV
REEGEAIARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECNLVHGVADLYR
LTLDDLLQMKRAADERDGTTPDTVKQGKVATKWADNLLAAIEASKKPPLERLLFALGIRH
VGESTGKTLADWLGRFALVRRAPAALLRVLPDIGGTVAESIADFFAEEKNQAAIDALLAA
GVAPQGEHAPKAQLREKLDEVSLLAALGIPKLTEPRARQLLADGMTLESLAFLKVFNVFG
LPATVAASLEEWMAAQANRDKLMALAALRTELLAQLPEAAEAEEGPMSGKTFVLTGTLPT
LSRDAAGAMIEAAGGKVSGSVSKRTTYVVAGADAGSKLAKAEELGVTILDEAALLALLGK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagaattgcaaagccccgccgggcgggccgcatggctgacggcggaactgaac
cggcacctgcacgcctaccacgtgctcgacgcccccaccattccggacgccgaatacgac
aagctgttcgccgagctgcagcggctcgaggaggaacacccggaactggcgcagccggac
tcgcccacccagcgtgtcggcgcgccgccgctgggccagttcgccgccgtcacgcacgcg
gtgccgatgctgtcgctgaacaatggcttcacggacgaggacatcgagaacttcgaccgc
cgcgtgcgcgagggactggacgtgctccaggtcgactatgcggccgagctgaagttcgat
ggcctggcgatcaacctgcgctacgagaacggcgtgttcgtgcaggccgccacgcgcggc
gacggctataccggcgaggacgtgtcggccaacatccgcaccatcaagtcgatcccgctg
cgcctgcggggcgacgacctgcccgaggtgctggaagtgcgcggcgaggtgctgatgttc
aaggccgatttcgcggccatgaacgagcgccagcgcgccgcgggccagaaggaattcgtc
aatccgcgcaatgccgccgccggcgcgctgcgccagctcgactcgcgcatcacggcgcag
cgcaggctgcgcttcttcgcctacggcatcggtgaactggtcggcgcggacatgccggaa
acccattccggcctgctcgactggtacgccgccctgggcctgccggtgaaccaggaacgc
gcggtcgtgcggggctacgacggcctcctggcgttttatgagcggatcggcaaggcgcgc
ccggcgatggcgtacgagatcgacggcgtcgtctacaaggtcaaccgggtcgaagaccag
cgtacgctgggcttccggtcgcgcgccccgcgcttcgcgctggcccacaagttcgccgcc
gaggaagcgctgaccacggtgcaggcgatcgaagtgcaggtgggccgcaccggcgccatc
acgccggtggcgcggctggtgcccgtgttcgtcggcggcgtcaccgtcaccaacgccacg
ctgcataacgaggacgaagtgcgccgcaaggacgtgcgggtgggcgataccgtcatcgtg
cggcgcgccggcgacgtgatccccgaggtgctggccgtggtgctcgaaaagcgccccacg
ccggaaccggcggcctacgtgctgcccaacacctgcccggtatgcggttcgcacgtggtg
cgcgaggaaggcgaggcgatcgcgcgctgttccggcgggctcacgtgcgcggcgcagcgc
aaggaagcgatccgccacttcgccggccgccgcatgatggatatcgaagggctgggcgac
cgctacatcgacagcctcgtcgaatgcaacctggtgcacggcgtggccgacctgtaccgg
ctgacgctggacgacctgctgcagatgaaacgggccgcggacgaacgcgacggcaccacg
ccggataccgtcaagcagggcaaggtcgccaccaagtgggccgacaacctgctggctgcg
atcgaagcgagcaagaagccgccgctggaacggctgctgttcgcgctgggcatccggcac
gtgggcgagtcgaccggcaagacgctggccgactggctcggcaggttcgcgctggtgcgc
agggccccggccgcgctgctgcgcgtgctgccggacatcggcggcacagtggccgaatcg
atcgccgacttcttcgccgaagagaaaaaccaggcggcgatcgatgcgcttctggccgcg
ggcgtggcgccgcagggcgagcatgcgccgaaagcccagttgcgcgagaagctggacgaa
gtctcgctgctggctgcgctgggcatcccgaaactgaccgagccgcgtgcccggcaactg
ctggccgacggcatgacgctcgaatcgctggccttcctgaaggtgttcaacgtgttcggc
ctgccggccaccgttgccgcgtcgctcgaggagtggatggcggcgcaggccaaccgggac
aagctgatggccctggccgcgctgcgcacggaactgctggcgcaactgccggaagcggcg
gaggcggaagaggggccgatgtcgggcaagacgttcgtcctcaccggcacgctgcccacc
ttgtcccgcgacgccgccggcgcgatgatcgaggcggctggtggcaaggtttccggctcc
gtgtcgaagcgcaccacgtacgtggttgccggcgccgacgcgggcagcaagctcgcgaaa
gccgaggaactgggcgtcacgatcctggacgaagccgccctgctggcactgctggggaag
taa
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