KEGG   PATHWAY: mun03030
Entry
mun03030                    Pathway                                
Name
DNA replication - Meriones unguiculatus (Mongolian gerbil)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mun03030  DNA replication
mun03030

Organism
Meriones unguiculatus (Mongolian gerbil) [GN:mun]
Gene
110545872  Rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
110546076  Pold2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
110546848  Pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
110548058  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
110548115  Rfc4; replication factor C subunit 4 [KO:K10755]
110548295  Mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
110548965  Prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
110549324  Rnaseh2c; ribonuclease H2 subunit C isoform X2 [KO:K10745]
110549361  Pola2; DNA polymerase alpha subunit B isoform X2 [KO:K02321]
110550662  Rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
110551473  Rpa1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
110551912  Rfc5; replication factor C subunit 5 [KO:K10756]
110552586  Rpa2; replication protein A 32 kDa subunit [KO:K10739]
110553165  Pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
110554196  Rfc2; replication factor C subunit 2 [KO:K10755]
110554299  Mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
110555226  Rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
110555416  Mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
110555564  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
110556914  Pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
110557028  Pcna; proliferating cell nuclear antigen [KO:K04802]
110557210  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X3 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
110558585  [KO:K03469] [EC:3.1.26.4]
110559717  Prim2; DNA primase large subunit isoform X1 [KO:K02685]
110560354  Pold4; DNA polymerase delta subunit 4 [KO:K03505]
110560718  Mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
110561172  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
110561337  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
110561608  Pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
110562269  Pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
110562915  Rfc3; replication factor C subunit 3 [KO:K10756]
110562937  Lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
110564073  Ssbp1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
110564354  Mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
110564587  Pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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