Microcaecilia unicolor: 115476570
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Entry
115476570 CDS
T09142
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
muo
Microcaecilia unicolor
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
muo03036
]
115476570 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
muo03400
]
115476570 (SMCHD1)
Chromosome and associated proteins [BR:
muo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115476570 (SMCHD1)
DNA repair and recombination proteins [BR:
muo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
115476570 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
HATPase_c_3
SMC_hinge
HATPase_c
CIDE-N
Motif
Other DBs
NCBI-GeneID:
115476570
NCBI-ProteinID:
XP_030068870
UniProt:
A0A6P7Z032
LinkDB
All DBs
Position
1:455204190..455939593
Genome browser
AA seq
2012 aa
AA seq
DB search
MAASVSAAMSGGRRTVFLFDRRTEQSDLERRTVEVGAETFEDFRRTVCQEFGISSEDAFI
ITTTNRTVITDTNFDTVKDGVTLCLLQSVSQSLVSATNERIDFLPHYDTLVKSGMYEYYA
SEGHNPLPFALAELIDNSLSATAHNKDSRNIEIRLVFDDSQGKPAVVVIDNGRGMTSKQL
NNWAVYRLSKFTQRSDFESDHSGYVRPAPVPRSLNSDISYFGVGGKQAVFFVGQSARMIS
KPIESQDVHELILSKEDFEKKERNKESIYSGFIRNRKPADSSHITGDDERFLHNLIVEEK
DKSSFTAVVITGVQPVHVQYLKNYFYHWTRQLAHIYHYYIHGPKGNELKSDKDAGAFNNI
DIEIYMFEKGKVTKINLREIKDDMQTLYISTAADSFEFKALVEGEGVVEGIIRYHPFLYD
RETYPDDPCCPTRVKDEDDDYDDDCLIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCM
PPKKRGLGPTECYSRISGALFSNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRM
KIDREFALWVKECHEKYDKQIKFTGFKGIITRPDLPAKRMQSPWATYTVIEWDGKTFKKG
QLVKSIKTVPIIHGSIVQFLLYGDHDGDVYATGGEVQIHVEPQALYDEMKSIPIIKLDKS
MPTSVVKKYIEDELARLPDRLSITWPEGDELIADQAIRAGTPIGALRIEILNKKGEAMQK
LPGTSHGGSKKLLVELKIILHSPSGDKDIISHISQHGGRWPYWFKKMENIQKLGSYTLKL
QVVLNESNANTYAGRSLPSKTINFKIIEGKPVKFSVGLLDPPFRVGVPFNIPLDMQDEFG
HSTLPVIDINPVLEASGLSLRYEGISKGTNYVIKGVTAKGLVNSCLGKNFNLRVILPGLK
EDNQILRIRLLPGPPSKLKVIPASEMLIIENGTVLPFQVEVLDEAANITAQPKLVVHCKF
LGAQSLPYYTVDCSNTGTGILQGPVVHVQSLKKDQTIKANFEIPSCKSVPAVEKTIKLLP
SSHVAKLQIFSMEGQKATQIKHQDEIEWIAGDTMHNLIFQMYDEGDREIMITASFAEKIK
VNWTPKINKDHLVQGLLPDVKVPTTIKDVRYCQVSFHDDHGSLESSFTVRPIPDEPRRLK
CRLKGLNTVKMGEELQGEVELMITDQYGNQIQTLASSCINLLGISGDGLDKSSLKITWQE
STQAMKVKGIKFSPVHPGSKELCFAWREFSDYIRVNLTAGPPAKLILVDWPGLKEPVSVI
NGKQLQKPLIVQLCDEWDNPSPEPNVKITLVKDNSLKIIPPNQPHKTDGSGRVNFGVSVI
SAPRGEHVLQFKASYNKSTLETPVVKLNILPDPEKPVRVNVSYDQDAIFTAGGFFTEFMV
SVVSEDDKIIRNLTAEHISMKMWKGQSSGSRPPVNAAKLNCSRTDKEGFFYFRDKIIPDH
AGKYSIQFVFDKTVVLVSQQIVITVMPSKPVKMIPDPQPATPAVSNVQNIASRTLVKNLC
FRIVDKYHNNAGTNLDGKLIARIKSCIEENTEIPLFQGNLTTIEFPVNQGSAEISNLVLA
ENSPGKDSTEYVIEFEPVLLPISRWSLESYSLPFMFYNGFKKQQQMAELTKEKDQLSQSI
TAYRSLFDTTNQLINEMQCQAKEAKAKEEHYRNELKHHKITVPEKNKIQSTEAILKQKMS
HRESIMNQPRRSCTLCNYSKCNQDILGKIAHLAEIENEEAARVISWHMASDMDCVVTTTT
EAARHIFDETQGQQQVLPLDSIYKKTLPDWTRPLPHIRNGRSYFKPLGNPVFARDLLHFP
ENAEQCQLVFAMLLGDTIILDDLDTANHYRKEVVKVTYCPTLLTREGDRIRNNGKFGGHQ
NKAPPLDKLRGMVFGAPLPKSYNNICAQIEHLQQYRSAAIKANEVKQELDLRLESLSTPE
MMKKKHELDEQERNLKLIEQKLGMTPSRGTDFSFEQATFDMTSTPIPTKRMRRESVKKTF
SSEEWVSAPVKKQLLMQSSTSETNGSLRKRKA
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagcgtcagcgcagctatgagcggcggcaggcgcacggtattcctcttcgac
cgtcgcacggagcagtcggacttggagcgaaggacggtggaggtgggcgctgagaccttc
gaggacttccgccgcacagtttgccaggaatttggcatctcatctgaagatgcattcata
atcacaaccactaataggacggtgattacagacactaactttgatacagtcaaggatggg
gttactttatgcttgcttcagtcagttagccagtctcttgtttcagcaacaaacgagcga
attgactttctaccgcactatgacactctggtcaaaagtggcatgtatgaatactatgct
agtgaaggtcacaatcctttgccttttgcccttgccgaattgattgacaattcattatca
gcaactgcacataacaaagacagtcgtaacatagagataagactggtttttgatgactca
caagggaaaccagctgttgtggtaattgacaatggtagaggaatgacctccaaacaactt
aacaactgggctgtgtatagattatcaaaatttacacaaagaagtgactttgaaagtgat
cattcaggatatgtacggcctgcacctgtccctcgtagtttgaacagtgacatttcatat
tttggtgttggagggaaacaagccgtcttttttgttggacagtcagccagaatgataagt
aagcctatcgaatctcaagatgtgcatgagcttattctgtccaaagaggattttgagaaa
aaggagagaaataaagaatcaatatatagtggatttattagaaatcgaaagcctgctgat
tcttcacacattaccggtgatgatgaaagatttctgcataatctcatcgtagaagaaaaa
gacaagagcagttttactgcagtggttattacaggggtacaaccagttcatgttcagtat
ttaaaaaattacttttatcactggaccaggcagttggcacacatataccattactatatc
catggaccaaaaggaaatgaactaaaatcagataaagatgcaggagctttcaataacatt
gatattgagatatatatgtttgaaaaagggaaagtaaccaagattaacctgcgtgaaata
aaagatgatatgcagacattgtacataagtactgcggcagacagctttgagtttaaagct
cttgtggaaggggaaggtgtagtagaaggaattatccgctatcaccctttcttgtatgat
agggaaacatatcctgatgacccttgctgcccaacaagagtaaaagacgaggatgatgat
tatgatgatgactgccttatagtggaaaagggagccagagggaaaaggccgatatttgaa
tgtttttggaatggaaggttaataccgtatacaacagtagaagactttgattggtgcatg
cctcctaagaaaagaggacttggaccaactgaatgctatagcagaatttctggggcatta
ttctctaatgacaagttccaagtcagcacaaacaaactgactttcatggacctggagtta
aagttaaaagataagaacactcttttcacaaggatttttaacggacaggaacagagaatg
aaaattgacagggaatttgccctatgggttaaagaatgtcatgaaaaatatgacaagcag
ataaaattcactggatttaaagggataattactcgtcctgatcttcctgctaaaaggatg
cagagcccatgggctacatacacagtaattgagtgggatggcaaaaccttcaaaaaagga
cagttggtgaaatcaatcaaaacagttcccataatccatggaagcattgttcagtttctt
ctatatggggatcatgatggagatgtgtatgctactggaggagaggttcaaattcacgtg
gaacctcaagcattgtatgatgaaatgaaaagtattccaattataaaactggacaaaagt
atgcctaccagtgtggttaaaaagtacatagaagatgaactagcaagacttccagatcga
ttatcaataacttggcctgaaggagatgaattgattgcagatcaagcaatacgtgctggc
actccaataggagcattacgaattgaaatactgaacaaaaaaggagaggccatgcagaaa
ttaccagggacaagtcatggagggtcaaagaaactacttgtggaactcaagattattcta
cattcaccaagtggagacaaagatataatttcccatattagtcagcatgggggtagatgg
ccttactggtttaaaaaaatggaaaatatccaaaaacttggaagttatacattgaaactg
caggtagtgttgaatgaaagtaatgcaaacacttatgcaggaagatctctaccgtctaaa
acaatcaattttaaaattatagagggtaaaccagttaaattttcagtgggtcttttggat
cctccatttcgtgttggagtaccctttaatattcctttggacatgcaagatgaatttggt
cattccactctacctgtgattgatattaatccagtactcgaggctagtggtctgtcactt
cgttatgaaggcataagtaaaggaacaaattatgtcattaaaggtgtgactgctaaaggc
cttgtaaacagttgcctgggcaagaatttcaatctaagggtgattttacctggcttgaaa
gaggacaaccagattttaagaataagattgctacctggaccaccttctaaactgaaagtg
ataccagcgtctgaaatgttgatcattgaaaatggaactgttttacctttccaagtggaa
gtgctagatgaagcagcgaatatcactgcacaacccaaactggtggtccattgcaagttt
ttaggtgctcagagcctcccatactacacggtggattgcagtaatactggaacaggaatc
ttacaaggcccagtggtgcatgtacaaagcctaaagaaggaccaaacaattaaagcaaat
tttgaaatacctagctgcaaaagtgtgccagcagtggaaaaaacaattaaattactccca
agcagccatgttgccaaactgcagatctttagcatggaaggacagaaagctactcagatc
aaacaccaagatgaaattgagtggattgcaggtgataccatgcacaacttgatctttcaa
atgtatgatgaaggtgatagagagatcatgataactgcttcttttgcagagaagattaaa
gttaactggacacccaagatcaacaaagatcacttggtccaaggattgttgcctgatgtt
aaagttccaacaaccataaaagatgtgcgttattgtcaagtttcatttcatgatgatcat
gggtctctagagagttctttcacagttaggccaattcctgatgagcccaggcgtcttaaa
tgcagattaaaaggattaaatacggttaaaatgggtgaagagctacaaggtgaagtcgaa
ttaatgattacagaccagtatggtaatcaaattcagacactggcatcatcttgtataaat
ctcttgggaatttctggagatggacttgataaaagcagtctgaaaattacttggcaggaa
agcacacaagctatgaaagtcaagggcataaaatttagtcctgtacatcctggaagcaaa
gaattgtgttttgcttggcgagaattttctgattatatacgagtgaatctgactgcagga
cctccagcaaaacttattcttgtggattggcctgggttaaaggagcctgtttcagtcatt
aatggcaagcaactacagaaaccactcatagtccaactctgtgatgagtgggacaatcca
tctccagaaccaaatgtcaagatcactcttgtgaaggataacagcttaaagatcattcct
ccaaaccagccacacaagacagatggaagtggaagggtcaactttggagtttctgttata
tctgcacctaggggagaacatgtgttacaatttaaagcctcctacaataaaagtacacta
gagactcctgtggtgaaattgaacatccttccagatcctgagaagcctgtgcgtgtgaac
gtcagttatgatcaagatgccatcttcacagcaggtggttttttcactgagtttatggtc
agcgttgtttcagaagatgacaagataattagaaacctcactgcagaacacatttcaatg
aaaatgtggaaggggcagagttctggaagtcgcccaccagtcaatgctgccaaactgaat
tgcagtagaactgataaagaaggcttcttttatttcagagataaaattattccagatcac
gcagggaagtacagcatccagtttgtatttgacaaaacagttgtgctcgtcagccaacag
attgtaattactgtcatgccaagtaagccagtaaagatgattccagatcctcaacctgct
accccagctgtttccaacgttcaaaacattgcctctcggaccctggtcaagaatttatgc
ttcaggattgtggacaaataccacaataatgctgggacaaatttggatggcaagctaata
gcaagaattaaaagctgcatcgaagaaaatacagagattccactatttcagggaaatctt
actacaatagagtttcctgtcaaccaaggatctgctgaaatttctaacttagttctggca
gaaaacagcccagggaaggatagcaccgagtatgtaattgaatttgagccagttctacta
cctatctcaagatggtctttggaatcgtacagtctgccattcatgttttacaatggtttt
aagaaacagcagcagatggcagaactgacaaaagagaaagaccagctcagtcagtcaata
actgcatatagaagtctgtttgatactacgaatcaactaattaatgagatgcaatgtcaa
gctaaagaagcaaaggctaaagaggagcattatcggaatgaactgaaacatcataaaata
actgtaccagaaaaaaataagattcaaagtactgaggctatcctgaaacaaaagatgtct
catcgggagtcaataatgaatcaacctagaagatcatgtacactatgtaactattctaaa
tgtaaccaagatattttgggaaagattgctcatttagcagagattgaaaatgaagaagca
gcacgggttatctcatggcacatggcaagtgacatggactgtgtggtaaccaccactaca
gaagctgctcgccacatctttgatgaaacacaaggtcaacaacaagtgttgcccttggat
tcaatttataagaaaacacttccagattggaccaggcctttaccccatattcgtaatggg
agaagttactttaaacctttgggaaatcctgtttttgctagggatctactgcactttcca
gagaatgcagagcaatgccaactagtgtttgcaatgctcttaggagacacgatcatttta
gatgatttggatactgctaaccactacagaaaagaggttgtaaaggtcacttattgtccc
accctgctgacgagggaaggagacaggattcgaaacaatggaaaatttggaggccaccag
aacaaagcgccgccattggacaaactcagagggatggtgtttggagcacctctgccaaaa
tcgtacaataatatttgtgcacagatagaacatcttcagcagtatcgctcagcagctatc
aaagccaatgaagtgaaacaggaacttgatctacgtttagagagccttagtactccagag
atgatgaagaagaagcatgaactggatgaacaggagagaaatcttaaactaatagagcaa
aaactaggcatgactccaagtagaggtacagatttcagctttgaacaagcaacatttgat
atgacgagcactccaattcctacaaaacggatgagaagagaaagtgtaaagaaaacattt
agctcagaagaatgggtttcagctcctgtaaagaaacagctgctaatgcagagctccaca
tcagaaacaaatggaagcttgcggaagagaaaggcatag
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