Mucilaginibacter sp. PAMC 26640: A0256_10885
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Entry
A0256_10885 CDS
T04335
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mup
Mucilaginibacter sp. PAMC 26640
Pathway
mup03030
DNA replication
mup03410
Base excision repair
mup03420
Nucleotide excision repair
mup03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A0256_10885
03410 Base excision repair
A0256_10885
03420 Nucleotide excision repair
A0256_10885
03430 Mismatch repair
A0256_10885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mup03032
]
A0256_10885
03400 DNA repair and recombination proteins [BR:
mup03400
]
A0256_10885
Enzymes [BR:
mup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A0256_10885
DNA replication proteins [BR:
mup03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A0256_10885
DNA repair and recombination proteins [BR:
mup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A0256_10885
NER (nucleotide excision repair)
GGR (global genome repair) factors
A0256_10885
MMR (mismatch excision repair)
DNA ligase
A0256_10885
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A0256_10885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
5_3_exonuc
RNA_lig_T4_1
Auto_anti-p27
Dna2
Motif
Other DBs
NCBI-ProteinID:
AMR31891
LinkDB
All DBs
Position
2494590..2496605
Genome browser
AA seq
671 aa
AA seq
DB search
MSPNEAKKLIDSLTAELKQHTYNYYVLAMPTITDFDFDKKLERLNALEKEFPEFLDPDSP
TQKVGGEITKEFVTVKHRWPMLSLGNTYNEQELIDFDQRVRKAIGEKFQYVCELKFDGLS
MSLTYENGKLAKAVTRGDGTQGDEVTTNVRTIHSIPKKLPAGNYPELFEIRGEVFMHLKA
FERLNKERIDNGEVAYANPRNFASGTMKLQDSAEVARRPLDCFLYGLYTEKTLFKTHWES
LEAVKSWGFHINDESRLVDDINGVLEFINKWDTERHHLSYDIDGIVIKVNNYSQQQELGF
TAKSPRWAISYKFKAERVETELLAVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAD
EITQRLKLHEHDTVFVEKGGEIIPKIISVNLDKRKPDAKPVAYLTHCPACHTELLRQEGE
AAWYCPNDEGCPPQIVGKMQHYIGRKAMNIDGLGDETINTLYNRQFIRHISDIYSLHTHI
AELKKMDRFGEQSINNMLDGIEKSKQQPFEKVLFGLGIRYVGETVARKLVAHFKTVDALM
AATAEELTVAEEIGGRIAESLVEYFSDPQHKAEIQKLKGAGLQFVAEEKEVTLASENLSG
KTFIISGTFEKYSRDELKDIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKATKLNIPI
ISDGELLAMLS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctaacgaagccaaaaaactcatcgattcgcttactgccgaactgaagcagcac
acctataactactatgtgctggccatgcccactattaccgattttgactttgataaaaag
ctggagcggttaaacgcgctggaaaaagagtttccggagtttttggatcctgattcgcca
acacaaaaggtagggggcgagatcactaaggaatttgttacggtaaagcaccgctggccc
atgctttcgctgggtaacacttataatgagcaggaactgatagattttgaccagcgtgta
cgcaaggcgatcggcgaaaaatttcagtacgtatgcgagctgaagttcgacggtttatct
atgagccttacctatgagaacgggaagcttgccaaggccgttacccgtggcgacggtacg
cagggtgatgaagtaacgaccaacgtacgcaccattcatagcattcccaaaaaattacct
gcaggtaattacccggaactcttcgagattcgcggtgaggtatttatgcacctaaaagcc
tttgagcggctgaataaggagcgtatcgacaatggggaggtggcttatgccaacccgcgt
aattttgcatcgggcaccatgaaattacaggattcggccgaagtggcccgccggccgctg
gattgttttttgtatggcctttataccgaaaaaaccttgtttaaaacccattgggaaagc
ctggaagccgtgaaaagctggggcttccatatcaatgacgaaagccggctggttgatgat
attaacggtgtgctggaattcatcaataaatgggatactgagcggcaccacctaagttat
gatatcgacgggatcgttatcaaagtaaacaactactcacagcagcaggagttgggcttt
actgctaagtcgccccgttgggccatctcctataagttcaaagccgaaagggtagagaca
gaactcctggccgttacttaccaggttggccgtacgggcgccgtaacaccggttgccaat
ttaaagccggtactgttggcgggtactaccgtaaaacgcgcaacactgcacaatgcagat
gaaattacgcagcgccttaaactgcacgagcatgatactgtttttgtggaaaagggcggg
gagatcattcccaagatcatcagcgttaacctggataagcgaaaaccggacgctaagccg
gtggcttaccttacacactgcccggcctgccataccgagttattacggcaggagggagaa
gccgcatggtactgccctaatgatgagggctgcccgccgcagattgtaggcaaaatgcag
cactacataggccgtaaagccatgaatatagatgggctgggtgatgagaccatcaatacc
ctttataatcggcaatttataaggcatatcagcgatatctattcgttgcatacgcacatt
gctgagttaaaaaagatggaccgtttcggcgagcagtctatcaataacatgctggatggg
atagagaaatctaaacagcagccttttgaaaaagtacttttcggcttggggatccggtat
gttggcgaaaccgttgcccgaaaattggtagcccattttaaaacggtagatgccctgatg
gcagccacggccgaggaacttaccgtcgccgaagaaattggcgggcgcattgccgaaagc
ctggtggaatactttagcgacccgcagcacaaggcggagatccagaaactaaaaggtgcg
ggtttacaatttgtggccgaagaaaaagaagtgacactcgcgagcgaaaatctttcgggc
aaaacctttatcatctccggtactttcgaaaaatactcaagggacgaattgaaagatatt
atagagcagaacggcgggaagatactgagcagtatctccgcgaagctgaactacctggtg
gcaggagataatatgggccctgccaaactggagaaagcaacaaaactaaatatcccgatc
atcagcgatggagaactgctggcgatgctatcgtag
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