Musa acuminata (dessert banana): 135583042
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Entry
135583042 CDS
T03447
Name
(RefSeq) DNA repair protein RAD16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mus03400
]
135583042
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
135583042
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_3
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_2
ResIII
Prok-RING_4
zf-rbx1
zf-C3HC4_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
135583042
NCBI-ProteinID:
XP_064981383
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Position
BXJ2-9:7804077..7816494
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AA seq
841 aa
AA seq
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MARRIANPRNRRPRRRRRQEETLDFLDADDRVSTSDSEYVLDEEEDGFDESDQDASALAL
GMMLSLQGIDTAGGGHGREEPVRPRNDSRRRDRSAALLLWQIWERENEKWIDEFEQKGQD
KLGFEPIGLVETAEPSPDVILPLLRFQKEWLAWALKQENSDIKGGILADEMGMGKTIQAI
SLVLTARALHSRSTGSGLDLNLPPPCSSYSLPEIKCTLVICPVVAVIQWVGEIDRYTEKG
STRVLVYHGAKRDKINSNFDDYDFVITTYSTIECEFRKYMMPPKVTCQWCSKMLYPNKLR
IHLKYYCGPDASKTEKQSKQVSKKKIEKLKGKRKGFDKTKKQDELADKLMNPSPGKSILH
SVKWERIILDEAHFIKDRRSNTAKAVFALKSFYKWALSGTPLQNRVGELYSLVRFLQIWP
YSFYLCKDCNCKVLDYGSGKICTSCPHAKVRHFCWWNKFIASPIQKTSIYNDGRRAMILL
KERILKTIVLRRTKEGRAADLALPPRIVYLRRDSLDRNEEEFYEALYTQSRVQFDAYATA
GTLMNNYAHIFDLLTRLRQAVDHPYLVLYSKTAEVANASKDDTEKQECGICHDPPEDMVV
TSCEHVFCKACLIDYSASLENVTCPSCSRPLTVDLTTKNVGGRITATAVKGHKSGILNRL
HDIEAFRTSTKIDALKEEIRDMVECDGSAKGIVFSQFTSFLDLICFSLQKAGIKCVQLVG
NMSLVERDKAIKAFSEDGDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVECQAQDR
IHRIGQYKPIRIVRFVIGDTIEERILKLQEKKELVFQGTIGHCSEAITKLTEEDLRFLFQ
V
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgaatcgcaaaccctagaaatcgtcggccccggcggcggagaaggcaggag
gaaaccctcgatttcttggacgccgatgatcgcgtctccacctcggattccgaatacgtt
cttgacgaggaagaagatgggtttgatgagagtgaccaggatgcttctgcgttggcactg
ggcatgatgctgtctctgcaaggtatcgacaccgctggcggcggccacggccgagaggaa
cctgtgcggccgagaaacgacagtcgtaggagggatagaagtgccgctttgcttttgtgg
cagatctgggaaagggagaatgagaaatggatcgatgagtttgagcagaagggccaggat
aaacttggttttgaaccgattggattagttgagactgccgaaccgtcgcctgacgtcata
ctccccctcctcaggttccaaaaggagtggcttgcttgggctcttaagcaggagaattcg
gacattaagggggggattcttgctgatgagatgggcatgggaaagactatacaggctatt
tcccttgtcctcaccgctcgcgccctccactcaaggagcactggttctggcctggacttg
aacttgccacctccctgttcatcatattcgctaccagagatcaaatgcaccctggtcatt
tgcccagtggttgcagtcatccagtgggtgggtgagatcgacaggtacacggaaaagggg
agcaccagggttttggtctatcatggggcaaagagggataagattaactctaactttgat
gactatgattttgtcattaccacatactcgacgattgagtgtgaatttaggaagtacatg
atgccgccaaaggtgacatgccagtggtgctctaagatgttgtaccctaacaagctgcgg
atacacttgaagtattactgtgggcctgatgcttctaagacggaaaaacaatcaaaacaa
gtgagcaagaagaagattgaaaaattgaaagggaagagaaagggatttgataagaccaag
aaacaggatgaattagctgacaagctcatgaacccatcaccgggaaagtcaatcttacat
tctgtgaaatgggaacgaattattctggatgaggctcatttcataaaagataggcgctcc
aatactgctaaggctgtttttgctttaaaatcattctacaaatgggctctaagtggcact
cctttgcaaaatcgagttggagagctttactcgctggttcggtttttgcaaatctggccc
tactcattttacctctgcaaagactgtaattgtaaggtactagattatggttctgggaaa
atttgcaccagttgtcctcatgctaaagtaaggcacttttgctggtggaataaatttatc
gcaagtccaatacaaaaaacatcaatatataatgatggcagaagagccatgatcttgcta
aaggaaagaattctgaaaaccatagtgttgaggcgtaccaaagaaggcagagctgcagat
cttgctcttccaccgagaattgtttatttgaggcgggattctctggatagaaatgaagag
gagttctatgaagcattatatacccaaagccgtgtgcaatttgatgcatatgctacagct
ggaacattgatgaataattatgcccatatctttgatctgcttacacggttgcgacaggca
gttgaccatccatatcttgtactatattctaagactgcagaagtagctaatgcaagcaag
gatgatactgagaaacaagagtgtggaatttgtcatgaccctccagaggatatggtggtt
acttcttgtgagcatgtcttttgtaaggcttgtttgattgactactctgcatccttggag
aatgtaacatgtccatcatgttcaaggcctcttactgtagatttaacaacaaaaaatgtt
gggggacggatcacagcaacagctgtcaagggccataaatcaggcatattgaacaggctt
catgatattgaagccttccgtacgagtacaaaaattgatgcattgaaggaagagataaga
gacatggttgaatgtgatggttctgcaaaaggaattgtgtttagtcagtttacatcattt
ttagatttgatatgtttctccctccagaaggctggtatcaaatgtgttcaattagttgga
aacatgagtcttgttgagagggataaagcaattaaggctttcagcgaagatggagattgc
aagatattcttgatgagcttgaaagctggaggtgtagccctcaatctgacggtcgcatca
catgttttcttgatggacccttggtggaatccagctgttgaatgccaagctcaagatcga
attcacagaattggccaatataagcctatcagaattgtccgatttgtgatcggggacaca
atcgaggaacgcatactgaagctgcaagagaagaaggaacttgtgtttcaagggacgatc
ggacactgttcagaggccatcacaaaattaacagaagaggacctgcggtttttgttccag
gtctaa
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