Musa acuminata (dessert banana): 135585240
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Entry
135585240 CDS
T03447
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135585240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mus03400
]
135585240
Enzymes [BR:
mus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135585240
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135585240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
135585240
NCBI-ProteinID:
XP_064949541
LinkDB
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Position
BXJ2-1:complement(12060677..12089528)
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AA seq
1155 aa
AA seq
DB search
MTDTTVKFGLLVSMFQAMLRDRTAAKKRKRFRTFLDRVYTGREYFSAVRLILPGLDRERG
TYGLKESTLATCVVDALGLAKDSPDALRLVNWRKGGARSGANAGNFALIAAEVLQRRQGM
VSGGLTIRELNNLLDQLASTENRGEKAVILSSLIKKTNALEMKWILMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDHTQRQKKQDIEVGKPVRPQLAMRVGDATTAW
KKLHGKHVVVECKFDGDRIQIHKNGEEIHFFSRNFLEHPEYAHGMSNVIVQNILVQRCIL
DGEMLVWDMAAQHFAEFGSNQEIAKAAKEGLESNRQLCYIAFDILYVGDTSVIHQSLTER
HSLLQKVVKPVKGRLEILVPDGGINDHRPPGQPFWSTVAYNVEDVERFFKDTIENRDEGI
VLKDLGSKWEPGDRSGKWLKLKPDYIHAGSDLDVLIIGGYFGSGRRGGEVSQFLVGLAEL
SDHTSYPKRFISFCRVGSGLSNDELNALVAKLKPYFRKNEYPKRVPHFYEVTNNSKERPD
VWIESPDKSIVISITSDIRTVKSEVFAAPYGLRFPRITRVRYDKPWYECLDVQSFIELVQ
SSNGNTRRADDAGLQNENPKHTRNTRRGERKKVTVVPAHFIQTDTSDVREETFIFANMVF
YFVNIPPSYSVDYFHKVVVENGGTFSMNLNDSVTHCIAAEKKAGIKYQAAVHHGDVIHYS
WVLDCCKQKRLLHLQPKYFLFFAGPSRKKILEEFDAFSDHYYWDLDVTDIKQIFSNIVGL
ESSDRVEYYRKKYCPVESLCLFRGCCIYFFKALPIINTDCKEVSELALRRMRLEITMHAG
EVCDSLTHATHLLVYSTNESYNFDHLYKSFPLIHRHLLHSKKLHIVRYQWLEDSVKKAKK
LPEDPYNLIPDSLEDLEVDNSEHGLPASTSNMENQSVSTLLDKYETGKRARPIQRNTGKG
NPRSTRRMRARIGNRPAKIDREESVSSDSAVVTGREEALESRKYNNIMGEGESANDNTRI
EGESAKTCESLGGTLVWGQTGSEDMHPAELHKKKDSDVGSDSMHVIEDRLGEGEKLEQMV
DPLHAMLLDMVPSLSQRNVEGESCSLGGEKQQQQDINGNPVKKVDGEKEKLNVDANPVKK
KVSYKDVAGQLLEDW
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgacggatacgacggtgaagtttgggctactggtaagcatgttccaggcgatgctccgt
gaccggaccgccgccaagaagcggaagcggttccggacgttcttggaccgggtctacacc
ggccgcgagtacttcagcgccgtccgcctcatccttccgggcctcgaccgcgagcgcggc
acctacggcctcaaggagtccaccctcgccacttgcgtcgttgacgccctcggccttgcc
aaagactcccccgacgccctccgcctcgtcaattggcggaagggcggcgccagatccggt
gctaatgccggaaatttcgccctcattgccgccgaggtgttgcaacgtaggcaggggatg
gtttctggcggacttacaatcagggagcttaacaatttgcttgatcaattggcatcaaca
gaaaataggggggaaaaggctgtgattctgtcaagtctcatcaagaaaacaaatgccttg
gagatgaagtggattttgatgatcatcttaaaagatttaaagctgggaattagtgaaaag
agcatatttcatgaatttcatcctgatgctgaagatttgttcaacgtcacctgtgacctt
aaattagtatgtgaaaagctgaaagatcacactcaacgacaaaagaaacaggatatagaa
gtcggaaaacctgttagaccacagttggctatgagagtcggtgatgcaacaactgcctgg
aagaagcttcatgggaagcatgttgttgttgagtgtaaatttgatggtgaccgcattcaa
atccacaaaaatggagaggaaatacactttttttcaaggaacttcctcgaacaccctgag
tatgcacatggcatgtcgaatgttattgtacagaacatactggttcagaggtgtatattg
gatggtgaaatgctggtttgggatatggctgctcaacattttgcagaatttggttcaaat
caagagatagcaaaggcagcaaaggaaggattggagagcaatcgccagttgtgctatatt
gcttttgatattctctatgtcggagacactagtgtgattcatcaaagtctgacggagcga
cacagtctcctgcaaaaagttgtaaaacccgtgaagggacgcctagaaatattggttcct
gatggaggcattaacgatcatcgtccgccgggtcaacctttctggtctactgttgcttac
aatgtggaagatgtggagaggtttttcaaagacaccattgagaacagagatgagggaatt
gtgctgaaggaccttgggtccaaatgggaacctggtgatcggagtgggaaatggctgaag
ctgaaacctgattatatacatgccggttcagacctagatgttcttattattggtggttac
tttgggtctggacgtcgaggaggagaggtatctcagtttctagtaggtcttgcggagctt
tcagatcatactagctatccaaaacgatttatttcattttgtcgagttggtagtgggctc
tctaatgatgaattaaatgctctagttgccaagttgaaaccttatttcaggaaaaatgag
tacccaaagagagtaccacatttttatgaagttacaaataattcaaaggagaggccagat
gtatggattgagagccctgataaatcaattgttatctctataactagcgatatccgaaca
gttaaatcagaggtgtttgcagcaccatatggtctaagattccctcgaattactcgggtg
agatatgacaagccatggtatgagtgtcttgatgtgcaatcatttatagaactggttcaa
tcgagcaatggaaatacacggagggcagatgatgctggcttgcaaaatgaaaatccaaaa
cacacaagaaacacaaggagaggagagaggaagaaggtgactgtggtcccggctcatttt
atccaaactgacacctcagatgttagggaggagaccttcatatttgcaaacatggtgttt
tactttgtcaacattcctccttcctactctgtggactactttcacaaagtagtggttgaa
aatgggggaacattctccatgaatcttaatgactcagtaactcactgcattgcagctgaa
aagaaagcaggaattaaataccaggcagcagttcaccatggagatgtcattcactattct
tgggtcttggattgttgcaaacaaaagcggcttcttcatctgcaacctaagtacttcctg
ttttttgccggtccttcaaggaaaaagattctggaggaatttgatgcattctcagatcat
tattactgggatctcgatgtcacagacatcaaacagatattcagcaatattgttggatta
gaaagttccgacagggtagagtattacaggaagaagtactgtccagtggaaagtttgtgc
ttatttcgaggttgttgcatttacttctttaaagcactgcctatcataaataccgattgc
aaggaagtatcagagcttgcattgaggagaatgagacttgaaataacaatgcatgctggt
gaagtttgtgacagccttacgcatgctactcatttgctagtctattcgacaaatgaaagc
tataactttgatcacttatataagagctttccacttatacatagacatcttctgcatagc
aagaagttacacatagtgagatatcaatggttggaagattctgtgaagaaggccaagaag
ctgcctgaggatccttataatttgatacccgattccttggaagatctggaagttgataac
agtgagcatggccttcctgcttcaaccagtaacatggagaaccagagtgtctcaacattg
cttgataaatatgaaactggaaaaagagcgagacctatacaaagaaacacagggaaggga
aatccaagatcgactagacgtatgcgagcaagaattggaaatcgacctgcaaaaattgat
agagaggaatcagtgagcagcgattcggcagtagtaactggtcgagaagaagctctggag
tcgagaaaatacaataatataatgggtgagggtgagagtgccaatgataatacgaggatc
gagggtgagagtgccaaaacatgtgaatcacttggaggtacacttgtttggggtcagact
gggtctgaagatatgcatccagctgaactgcacaaaaagaaagacagtgatgtaggatca
gatagcatgcatgtgatagaagaccgcttaggggaaggcgaaaagttggagcagatggta
gatccattgcatgctatgttactagatatggtaccaagtctcagccagagaaatgtggaa
ggcgagagttgcagtcttggaggtgagaaacagcagcagcaagatatcaatggcaatcca
gtgaagaaggttgatggtgagaaggagaagctaaacgttgatgcaaatccagtaaagaag
aaggtgagttacaaggatgttgctggtcagctcctcgaagattggtga
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integrated database retrieval system
