Flagellimonas oceani: GVT53_08785
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Entry
GVT53_08785 CDS
T06500
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mut
Flagellimonas oceani
Pathway
mut03030
DNA replication
mut03410
Base excision repair
mut03420
Nucleotide excision repair
mut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GVT53_08785 (ligA)
03410 Base excision repair
GVT53_08785 (ligA)
03420 Nucleotide excision repair
GVT53_08785 (ligA)
03430 Mismatch repair
GVT53_08785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mut03032
]
GVT53_08785 (ligA)
03400 DNA repair and recombination proteins [BR:
mut03400
]
GVT53_08785 (ligA)
Enzymes [BR:
mut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GVT53_08785 (ligA)
DNA replication proteins [BR:
mut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GVT53_08785 (ligA)
DNA repair and recombination proteins [BR:
mut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GVT53_08785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GVT53_08785 (ligA)
MMR (mismatch excision repair)
DNA ligase
GVT53_08785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GVT53_08785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Mig-14
Zn_ribbon_Top1
DED
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QII44773
UniProt:
A0A6G7J1N3
LinkDB
All DBs
Position
complement(1893504..1895504)
Genome browser
AA seq
666 aa
AA seq
DB search
MSIEQKITSLREELREHNYKYYVLDEPSISDYEFDMKLKELQKLEAEHPEFHDPTSPTLR
VGGMVTKNFETVPHEHRMYSLDNSYSKEDLEDWEKRIQRILGDAEVEFTCELKYDGASIS
LTYENGFLAKAVTRGDGFQGDDVTNNIKTIKSVPLQLKGDYPSKFDIRGEIILTLEGFAK
MNAERVEAGEEPYMNPRNTASGSLKLQDSALVAQRPLECLLYSIAGNDLGVNSQFDVLEK
ARSWGFKVPTVAKLCKSTAEVMQFVEYWAIHRHDLPYETDGVVVKVNSIQQQDELGYTAK
SPRWAMAYKFKAEQATTILNKITYQVGRTGAITPVANLQPVLLAGTTVKRASLHNADQIA
KLDVREGDSVFVEKGGEIIPKIVKVDFTKRDVNSKPTEYITHCPECGTELIRKEGEAQHF
CPNDIGCPPQITGRIQHFISRKAMDIEGLGGETVELLFKEGLINNYADLYILTKEQILPL
ERMADKSAENLVNGVQASKAIPFERVLFALGIRYVGETVAKKLAKAFKNIDALMVASQEQ
LVAVDEIGERIAESVVSFFSEPANVGTIDRLKSYGLQFSLSEAQLENQTELLKGQTFVIS
GVFETIGRNDLKKLIEDNGGKVSSSISSKTSFLVAGDNMGPSKRTKAEGLGVPIISEQEF
LQKLNV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagaacaaaaaataacctccctgcgcgaggagctaagggagcacaactataaa
tactacgtgctcgatgagccgtcgatttccgattacgagtttgatatgaagttgaaggaa
cttcaaaaactggaagcggaacatcccgaatttcacgacccgacctcgccaaccttgaga
gtgggcgggatggtgaccaaaaactttgagaccgttccccacgagcatcgaatgtattcg
ctggacaattcatattccaaagaggatttggaggattgggagaagcgtatccagcgtatt
ttgggggatgccgaagtggaattcacgtgtgagttaaaatatgacggcgcttccatcagt
cttacctacgaaaacggatttttggccaaagcggtaacccgtggcgatggttttcaaggg
gatgatgtgaccaataatatcaaaaccataaaatcggttcccttgcaattgaaaggggat
tatccatcaaaatttgatattcgaggggagattatcctaacactggaaggttttgccaaa
atgaacgcagagcgtgtggaagcgggtgaggagccttacatgaaccctagaaataccgca
tctggaagtttaaaattacaggatagtgccttggtggcgcaacgaccgttggaatgccta
ttgtacagcatagccggcaatgatctgggagtaaattcccagtttgacgtattggaaaaa
gcacgctcatggggattcaaggtccccacggtcgcaaagctctgtaaatccactgcggaa
gtaatgcagtttgtggaatactgggccatccaccgtcacgatctgccctatgaaacggat
ggcgtcgtggtcaaggtaaacagcatccaacagcaagacgaactgggctacaccgcaaaa
tccccgcgttgggcgatggcctacaagttcaaggcggaacaggccaccaccatattgaac
aaaatcacctatcaagttgggcgtacgggcgcgattacccctgtggccaacttgcaaccc
gttttgctggcaggaactacggtaaaacgtgcttcgttgcacaatgccgaccaaattgcc
aagctcgatgtgcgcgaaggcgattccgtttttgtggaaaaaggcggggagatcatccct
aaaatcgtgaaggtcgatttcaccaaaagagacgtaaattcaaaacccaccgagtatata
acgcattgtcccgaatgtggcacggaactcatcagaaaagaaggcgaagcccagcatttt
tgtccgaatgatattggttgccccccacagattacgggccgtatccagcactttatttcc
agaaaggccatggatatcgaaggtttgggcggtgaaacggtggaactgctcttcaaagag
gggttgatcaacaattatgcggacctctacattttgaccaaggaacagattttgcccttg
gaacgtatggcggacaaatctgccgaaaacttggtgaacggcgtgcaggcatccaaagcg
attccgtttgaacgggtactttttgccttgggaatccgatatgtgggggagacggtggcc
aaaaaactggcaaaggccttcaaaaatatagatgcattgatggtcgcttcgcaagaacaa
ctggtggccgtggacgagataggggagcggattgccgaaagcgtggtcagttttttctcc
gagcctgcgaatgttgggacgattgaccgtttaaaatcctacggactgcaattttccttg
tccgaagcgcaattggagaatcaaacggaactgctcaagggccagacttttgtaatttcg
ggtgtgttcgagaccattggccgtaacgatcttaagaaattgatcgaggacaatgggggc
aaagtgtcttcgtccatatcctcgaaaaccagttttttggtcgcgggcgacaatatgggt
cccagcaagcgaaccaaagcggaaggtttgggcgtgcccatcatatcggaacaggaattt
cttcaaaaattgaatgtatga
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