Mucilaginibacter sp. cycad4: SNE26_18750
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Entry
SNE26_18750 CDS
T10709
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03030
DNA replication
muy03410
Base excision repair
muy03420
Nucleotide excision repair
muy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNE26_18750 (ligA)
03410 Base excision repair
SNE26_18750 (ligA)
03420 Nucleotide excision repair
SNE26_18750 (ligA)
03430 Mismatch repair
SNE26_18750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
muy03032
]
SNE26_18750 (ligA)
03400 DNA repair and recombination proteins [BR:
muy03400
]
SNE26_18750 (ligA)
Enzymes [BR:
muy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SNE26_18750 (ligA)
DNA replication proteins [BR:
muy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SNE26_18750 (ligA)
DNA repair and recombination proteins [BR:
muy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SNE26_18750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNE26_18750 (ligA)
MMR (mismatch excision repair)
DNA ligase
SNE26_18750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SNE26_18750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Nlig-Ia
RNA_ligase
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WPU98067
LinkDB
All DBs
Position
complement(4674937..4676949)
Genome browser
AA seq
670 aa
AA seq
DB search
MSSAEAKKQIEALTAELKQHNYNYYVLAMPTISDFDFDKKLELLNKLEKEYPDFADPDSP
TQKVGGDITKEFVTIRHRWPMLSLGNTYNEQELLDFDQRIRKAIGDNFEYVCELKFDGLS
MSLTYEDGKLVRAVTRGDGVQGDEVTTNIKTIHTIPKRLHGEGYPAYFDIRGEVFMHRKA
FDRLNNERIESGEVPYANPRNFASGTVKMQDSAEVAKRPLDCFLYFLYTEKTVFKTHWES
LQAVKTWGFHTNEHSELCPDINCVLEFINKWDKERFNLSYDIDGIVIKVNNYSQQQELGF
TAKSPRWAISYKFKAERVETELLEVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIIRLDLHEGDTVFVEKGGEIIPKIISVNPEKRKADALPVVYRTTCPACDTPLERKEGEA
AFYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDETIETLYSKGFISHISDIYELHAHAA
ELKQLGRFGEKSINNMLDGIEASKKMPFEKVLFGLGIRYVGETVARKLAFHFKSIDKLME
ASVEELTAAEEIGERIAQSITEYFAGDIHRQEIQKLREQGLKFIAQEKEVVLASEKLAGM
NFIISGTFGNFSRDELKDIIEQNGGKILSSISAKLNYLVAGENMGPAKLEKANKLNIPII
SDDELIELIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagctgaagcaaaaaaacaaatagaggcattaacagccgaacttaaacagcat
aactacaattactatgtgctggccatgccaaccatttctgattttgattttgataaaaaa
ctggagttgcttaacaaactcgaaaaagaatacccggattttgctgaccctgattcgccc
acgcaaaaggtaggcggggatattaccaaggagtttgtaaccatcaggcaccggtggccg
atgctgtcattaggcaatacctataatgaacaggaactgcttgattttgaccagcggatc
cgcaaagcgattggcgataattttgaatacgtatgtgagcttaagtttgatggtttgagt
atgagcctcacttatgaagacggtaaactggtacgggccgttacccgcggcgatggtgta
cagggcgacgaggtaaccaccaatattaaaaccattcataccatccctaagcgcctgcat
ggcgaaggctatccggcttattttgatatccgcggtgaagtgttcatgcaccgcaaggct
tttgacaggttgaataacgaacggattgaaagcggagaggtgccttatgccaacccccgc
aattttgcgtcgggtacagtaaaaatgcaggattcggccgaggtagctaaacgcccgctt
gattgtttcctttactttttatacaccgaaaaaactgtatttaaaacccattgggaaagc
ctgcaggctgttaaaacctggggcttccataccaatgagcatagcgagctttgcccggat
attaattgcgtactggagttcattaataaatgggataaggaacgttttaacctgagctat
gatattgacggcatagttattaaagtaaataactactcacagcagcaggagcttggcttc
acggccaaatcgccgcgctgggccatatcttacaagtttaaggccgagagggtggagacc
gaactgcttgaggtgacttaccaggtgggccgtaccggcgcagttaccccggtagctaac
ttaaaacctgtgctgcttgccggtactacggtaaagcgggcaacgctgcataatgctaat
gagatcatccgcctggatttgcatgagggtgataccgtttttgttgaaaaaggcggtgaa
atcatccccaagatcatcagcgtaaaccccgaaaaacggaaggccgatgcattgcccgtt
gtttaccgtaccacctgccctgcctgcgacacaccacttgaacgcaaggaaggtgaagcc
gcgttttattgccctaatgatgaaggctgcccgcctcagattgttgggaagatgcagcat
ttcatcggtcgtaaggctatgaatattgatggtttgggtgatgaaaccatcgaaacctta
tacagcaaaggatttataagccacatcagcgatatctatgagctgcatgcccatgctgcc
gaattgaaacaattgggccgttttggcgaaaaatcgatcaataatatgcttgatggtatt
gaagcctctaaaaaaatgccttttgaaaaagtgctgtttggtttgggcatccgttatgta
ggcgaaaccgttgcccgtaagctggccttccattttaaatcgatagataaattaatggaa
gcatcggttgaagaacttacggctgccgaagagataggcgaacggatagcgcaaagtata
accgaatattttgcgggtgatatccatcgccaggaaatacaaaaactaagggagcagggc
ctaaaatttattgcccaggaaaaagaagttgtactggccagtgaaaaacttgccgggatg
aactttattatatcgggaacgttcgggaacttttcgcgtgatgagctgaaagatatcatt
gagcaaaacggcggcaagatattgagcagtatatcggccaaacttaattacctggttgca
ggcgaaaatatggggcctgcaaagctggaaaaggctaataaacttaatatcccgattatt
agtgatgatgagctgatagaactgataaaataa
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