Microcoleus vaginatus: D0A34_16050
Help
Entry
D0A34_16050 CDS
T08026
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mvag
Microcoleus vaginatus
Pathway
mvag03030
DNA replication
mvag03410
Base excision repair
mvag03420
Nucleotide excision repair
mvag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0A34_16050 (ligA)
03410 Base excision repair
D0A34_16050 (ligA)
03420 Nucleotide excision repair
D0A34_16050 (ligA)
03430 Mismatch repair
D0A34_16050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvag03032
]
D0A34_16050 (ligA)
03400 DNA repair and recombination proteins [BR:
mvag03400
]
D0A34_16050 (ligA)
Enzymes [BR:
mvag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D0A34_16050 (ligA)
DNA replication proteins [BR:
mvag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D0A34_16050 (ligA)
DNA repair and recombination proteins [BR:
mvag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D0A34_16050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0A34_16050 (ligA)
MMR (mismatch excision repair)
DNA ligase
D0A34_16050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0A34_16050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
DUF3748
Motif
Other DBs
NCBI-ProteinID:
UNU20185
LinkDB
All DBs
Position
3942772..3944922
Genome browser
AA seq
716 aa
AA seq
DB search
MAAEIQQQIQQLRQQLQEASYAYYVLDAPIMPDEVYDRLYRQLQELESDYPELITAESPT
QRVGEQPATQFFSVKHNIPLYSLENAFNFEEFAKWQERWQRVAPPLTSGQEGNAPPLTPP
CEGGGQEGITSSISNQENREITPPLSKGGLGGVCYVCELKIDGSALALTYENGVLVRGAT
RGDGIAGEEITQNVKTIRSIPLKLNLDNPPPVVEVRGEAFLSLAVFEEINREREKAGEQL
FANPRNAAAGTLRQLDSKIVDKRRLDFFAYTLHLDEGNEEKTQWESLELLRRMGFKVNPN
RKICYALDEVREYYEYWDTERRNLPYMTDGVVVKINSVLLQKQLGFTQRFPRWAIALKYP
AAEVPTIVEAVTVQVGRTGALTPVAELKPVQLAGTTVSRASLHNSDRLSDLNLHIGDTVI
VRKAGEIIPEVVRVLPELRPQKAQLFQMPSCCPECQQPVVREKGEAVTRCINTSCPAILR
GSLIHFCSRDALDINGVGEKLVQQMVDSNLVHSAADLYDLTAEKLMSLERMGKKLAEKLV
SAIAQSKNQPWSRVLYGLGIRHVGTVNAQLLTEKFANVEELAAVSAASIEGVYGIGSEIA
QAVYQWFRVPANQSLIARLKTAGLQLQSEVKNSNLARTNLPLAGKTFVLTGTLPTLKRDE
AKDLIQKAGGKVTSSVSAKTDYVVVGEEAGSKLEKAQSLGLELLSEAELLELLSKP
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagattcagcagcaaattcaacagttgaggcagcagctacaggaagctagc
tatgcttattatgttctcgatgcgccgatcatgccagatgaggtgtacgatcgactttat
cgccagttgcaagaattagaatcagattatcctgaattaattactgcggaaagtccgact
cagcgggtgggagaacagccggctactcaattttttagcgtcaaacacaatattcctctc
tacagtttggaaaatgcttttaattttgaagaatttgctaaatggcaggaacgctggcaa
agggtagcgccccccctaacctccggtcaagagggaaatgcaccccccctaaccccccct
tgtgaaggggggggacaagagggaataacatcttccattagcaatcaggaaaacagggaa
attactcccccccttagcaagggggggttggggggggtttgctatgtttgcgagttaaaa
attgacggttctgctttagcgttaacctatgaaaatggagttttagtccgtggtgcgaca
cggggagacggcattgccggagaggaaattactcaaaatgtcaagactattcgctcgatt
cctttaaagctcaatttagataatccgccgccggttgtggaagtgcggggagaagctttt
ttgtctttagctgtgtttgaggaaattaatcgggaacgggaaaaagccggggaacaattg
tttgctaatcctcgcaatgctgcggcgggtacgctgcggcagttggattctaaaattgtg
gataagcgacggttggatttctttgcttatactctgcatttagatgagggtaacgaggag
aaaacgcagtgggaatcgttggaattgttgcgaagaatggggtttaaggtaaatcccaat
cgcaaaatttgctatgctttggatgaggttcgggagtattacgaatattgggatactgaa
cggcgaaatttgccttacatgactgatggggttgttgttaagattaattcggttttgctg
caaaaacaattgggttttactcagaggtttccgcgttgggcgatcgcattgaagtatccc
gccgccgaagtccctacaatagtagaagctgtcaccgtgcaagtagggagaaccggggct
ctgactcctgtagcggaactcaaaccggtgcagttggcggggacgacggtttcgcgggct
tctctccacaacagcgatcgactttccgacctaaatctccacattggcgatactgtaatt
gtcagaaaagctggggaaattataccagaagttgtgcgagttttgccggaacttcgtccc
caaaaggctcaacttttccaaatgcctagttgctgtcccgaatgccaacagcctgtggtt
cgggaaaagggggaggccgttactcgctgcatcaatacgtcttgtcctgcgattttgagg
ggttcactgattcatttttgcagccgggatgctctcgatattaacggtgttggggaaaag
ttggtgcagcagatggttgatagcaatctggtgcattctgcggcagatttgtacgatttg
actgcggaaaaattgatgagtttggaacggatgggtaagaagttagcagaaaagttggta
agtgcgatcgcccaatcgaaaaatcaaccttggtcgcgggtactttacggcttgggtatc
cgccacgtcggcacagtcaacgctcaattgctgacagaaaaatttgccaatgtggaagag
ttagcagcggtatcggcagcatcgattgagggggtttacggcatcgggtcggaaattgct
caagctgtttatcagtggtttcgagtgccggcaaatcaaagtttaattgcacggttgaaa
actgccggcttgcaattgcagtcagaagtgaaaaattccaatttagcccgcacaaattta
ccacttgcaggcaaaacttttgtgctgacgggaactttgcccactttgaaacgagatgaa
gctaaagacttgattcaaaaagcaggcggtaaagtcacaagttctgtgagtgctaaaaca
gattatgtggttgtgggagaagaggcgggttctaaattggaaaaggctcaatctttgggg
ctagaactactttcggaagctgagttattagaactgctatcgaaaccctaa
DBGET
integrated database retrieval system
