Massilia varians: MasN3_31500
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Entry
MasN3_31500 CDS
T08769
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mvar
Massilia varians
Pathway
mvar03030
DNA replication
mvar03410
Base excision repair
mvar03420
Nucleotide excision repair
mvar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MasN3_31500 (ligA)
03410 Base excision repair
MasN3_31500 (ligA)
03420 Nucleotide excision repair
MasN3_31500 (ligA)
03430 Mismatch repair
MasN3_31500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvar03032
]
MasN3_31500 (ligA)
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_31500 (ligA)
Enzymes [BR:
mvar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MasN3_31500 (ligA)
DNA replication proteins [BR:
mvar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MasN3_31500 (ligA)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MasN3_31500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MasN3_31500 (ligA)
MMR (mismatch excision repair)
DNA ligase
MasN3_31500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MasN3_31500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
DUF4796_N
DUF7340
Motif
Other DBs
NCBI-ProteinID:
BDT59656
LinkDB
All DBs
Position
complement(3554308..3556614)
Genome browser
AA seq
768 aa
AA seq
DB search
MAWLVRELNRHIYNYHVLDAPTIPDAEYDRLFKELQDLESAHPQAVSNDSPTSRVGAAPI
PEFKQVTHSVPMLSLNNGFMDEDVENFDRRVREGLDARQVGYCAELKFDGLAISLRYENG
VFVQAATRGDGYTGEDVTANIRTVRVIPLRLHGDEVPSVLEVRGEVLMFKDDFNRLNGRQ
REAGHKEFANPRNAAAGSLRQLDARITAQRKLRFFAYGIGFLAGAELPESHSAVLDWFDR
LGLPVSKERAQVSGCEGLLGYYRSIGERRASLPYEIDGVVYKVDRVADQARLGFVSRAPR
FALAHKFPAEEALTQVSAIDVQVGRTGAITPVARLVPVSVGGVTVTNATLHNEDEVLRKD
VRVGDTVIVRRAGDVIPEVLAVVLERRPSPEPARYKLPDSCPVCGSHVVREEGEAVARCS
GGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECSLIHGVADLYKLTLDDLLKMKR
LADERDGTTPETVKQGKVATKWADNLLAAIAASKNPPLERLLFALGIRHVGESTAKTLAD
WLGRFELVRRAPSALLRVLPDIGGTVAEAIAEFFAEEKNQRAIDALLGAGVAPQGEHAPK
AQLREKLEDLNLLAALGIPKLTEPRARQLLAAGQTLESLAHLNVFGVFGLPAGVATALEE
WMAQPGHREQLAALARLRAELLAQLPQEAAAEGIFAGKTFVLTGTLPTMSREAAGALIEA
AGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVSILDEAGLLALLNP
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcctggctggtcagggagctgaaccgccacatctacaattaccacgtgctcgatgcg
ccgaccattccggacgccgagtacgaccgcctgttcaaggaactgcaagacctggaaagc
gcgcacccgcaggcggtcagcaacgactcgccgacctcgcgcgtgggcgccgcgccgatc
cccgagttcaagcaggtgacccactcggtgccgatgctctcgctgaacaacggcttcatg
gacgaggacgtcgagaacttcgaccgccgcgtgcgcgaaggcctggacgcccggcaggtg
ggctattgcgccgaactgaagttcgacggcctggcgatcagcctgcgctacgagaacggc
gtgttcgtgcaggccgccacccgcggcgacggctataccggcgaggacgtgacggccaac
atccgcaccgtccgggtgattccgctgcgcctgcacggcgacgaggtgccgagtgtgctc
gaagtgcgtggcgaagtgctgatgttcaaggatgacttcaatcgccttaacgggcgccag
cgcgaggccgggcacaaggaattcgccaacccgcgcaacgccgccgcgggcagcctgcgc
cagctggacgcgcgcatcacggcgcagcgcaagctgcgcttcttcgcgtacggcatcggc
ttcttggcgggcgccgagctgccggagtcgcattcggcggtgctcgactggtttgaccgc
ctcggcctgccggtctcgaaagagcgcgcgcaggtgagcggctgcgaaggcctgctcggc
tactatcgcagcatcggcgaacgccgtgccagcctgccctatgaaatcgacggcgtggtg
tacaaggtcgaccgcgtggccgaccaggcccggctcggcttcgtgtcgcgcgcgccgcgc
ttcgcgctggcccacaagttcccggccgaggaagcgctgacgcaggtatcggcgatcgac
gtgcaggtcggccgcaccggcgccatcacgccggtggcgcgcctggtgcccgtctcagtg
ggcggggtcaccgtcaccaacgccaccttgcacaacgaggacgaggtgctgcgtaaggac
gtgcgggtgggcgacaccgtgatcgtgcgccgcgccggcgacgtcattccggaagtgctg
gccgtggtgctggagcgccgcccgagcccggagccggcgcgctataagctgccggacagc
tgcccggtgtgcggctcgcacgtggtgcgcgaagagggcgaggcggtggcgcgctgctcg
ggcggcctgacctgcgccgcccagcgcaaggaagccatccggcatttcgccggccggcgc
atgatggacatcgaaggcctgggcgaccgctacatcgacagcctggtcgagtgcagcctg
atccacggcgtggccgacctgtacaagctgaccctcgacgacctgctcaagatgaaacgc
ctggccgacgagcgcgacggcacgacaccggagacggtgaagcagggcaaggtcgccacc
aagtgggccgacaacctgctcgcggcgatcgcggccagcaagaacccgcccctcgagcgc
ctgctgttcgcgctcggcatccgccacgtgggcgaatccaccgccaagaccctggccgac
tggctgggacgcttcgaactggtgcgccgggcaccaagcgcgctgctgcgcgtgctgccc
gacatcggcggcacggtggccgaggccatcgccgaattcttcgcggaggagaagaaccag
cgcgcgatcgacgcgctgctgggcgcgggtgtggcgccgcagggcgagcatgccccgaaa
gcgcagttgcgcgagaagctggaagacctgaacctgctggcggcgctcggcatcccgaag
ctgaccgaaccgcgtgcgcgccagttgctcgccgccggccagaccctggagtcgctggcg
cacctgaacgtgttcggcgtgttcggcctgccggccggcgtcgccacggcgctggaggaa
tggatggcgcagcccggccatcgcgagcagctcgccgcgctagcccggctgcgcgccgaa
ctgctggcccagttgccgcaggaggccgccgccgagggcattttcgccggcaagaccttc
gtgctgaccgggacgctgccgaccatgagccgggaagccgcgggcgccctgatcgaggcg
gccggcggcaaggtgtcgggctcggtctcgaagaagacgtcctatgtcgtggcaggcgcc
gaggcgggcagcaagctcgccaaggcggaagaactcggcgtatccatcctcgacgaagca
ggcctgctggcgctgctcaatccctga
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