Mannheimia varigena USDA-ARS-USMARC-1388: X875_15150
Help
Entry
X875_15150 CDS
T03029
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03030
DNA replication
mve03410
Base excision repair
mve03420
Nucleotide excision repair
mve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X875_15150
03410 Base excision repair
X875_15150
03420 Nucleotide excision repair
X875_15150
03430 Mismatch repair
X875_15150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mve03032
]
X875_15150
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_15150
Enzymes [BR:
mve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X875_15150
DNA replication proteins [BR:
mve03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X875_15150
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X875_15150
NER (nucleotide excision repair)
GGR (global genome repair) factors
X875_15150
MMR (mismatch excision repair)
DNA ligase
X875_15150
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X875_15150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AHG80133
LinkDB
All DBs
Position
1601720..1603777
Genome browser
AA seq
685 aa
AA seq
DB search
MSLFSQGSLFEENATPALVEQIEQLRQTLRQYEYEYHVLDTPSVPDAEYDRLMNELKNIE
WQHPELITADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFGDDDLDGFLRRMESYIIANP
NELTFCCEPKLDGLAVSILYENGLLTRAATRGDGTTGEDITANIRTIRNIPLKLNTLNPP
ARLEIRGEVFMPQAGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY
GIGIYESDDELPNTQFERLQWLKSLGIPVNNEIRLAQGKTELLAYYAEIQAKRPTLGYDI
DGTVLKVNDIALQEQLGFISRSPRWAIAYKFPAQEEITILKEVDFQVGRTGAITPVAKLE
PVFVAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQITGVVAERRPENAKKIEF
PTACPICNSAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMA
RELIKTPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEAT
ALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLITQGVHWE
NVVKIEIVDNPLKDKNVVLTGTLIQMTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAG
SKLTKAQELGIQILSEQGFIELTKG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctttatttagccaaggctctttatttgaagaaaatgcaacaccagcgttagttgag
caaatcgaacaacttcgtcaaacgttacgtcaatacgagtatgaatatcacgttttagat
actcccagtgtgccagatgcggaatacgaccgcttaatgaatgagctgaaaaatattgaa
tggcagcacccagaactgattaccgcagattcgccaacacaacgggtgggagcaaaacca
ttggcaggctttgctcaagtgacgcacgaaatcccaatgctttcgttagataacgccttc
ggtgatgacgatctagatggctttttacgccgaatggaaagctatattattgccaatcca
aatgagttaacattttgctgcgagccgaaattagacggtttagccgtaagtattttgtat
gaaaacggcttacttacccgtgcagctacccgaggcgatggcacaacaggcgaagatatt
accgccaatatccgtaccattcgtaatattccattaaaactaaacacgctcaatccacca
gctcgtttagaaattcgtggtgaagtgtttatgccacaagcgggctttaatgagttaaat
gaaaaagccttagccaaaggcgagaaaacctttgctaaccctcgtaatgcggcagcaggt
tcgttaagacagttagatccaaaaattactcgccaacgcccactcgtgctaaatgcttac
ggtattggcatttatgaaagtgatgatgaattgccaaacactcagtttgagcgtttgcaa
tggctcaaatcgcttggcattcctgtcaataatgaaatccgcttagctcaaggcaaaaca
gaactcttggcgtattatgccgaaatccaagctaaacgcccaacgctaggctatgatatt
gatggcacagtattgaaagtcaatgacattgccttacaagagcaacttggttttatctct
cgctccccacgctgggctattgcttacaaattccctgcacaggaagaaataactattttg
aaagaagtagatttccaagtaggaagaacaggggcaatcacgcctgttgcaaaattagag
cctgtgtttgtagcaggtgtaacagtaagcaatgctacgctacataatggcgatgaaatt
gaacgtttaggcattgtgattggcgataccgtgattattcgccgtgcaggcgatgttatt
ccacaaattacaggagtggttgctgaacgccgccctgaaaatgcaaaaaaaattgaattt
ccgaccgcttgtccaatctgtaattcagcggtggtgcgtgtggaaggcgaagccgtagca
cgctgcactggcggactgttctgcggagcccaacgcaaagaagcgttaaaacatttcgtt
tctcgcaaagcgatggatattgacggcgtaggcgaaaaactgattgagcagttaatggct
cgtgagttaattaaaactccagccgatctattcaagctcgatcatacaactttaatgcga
ttagaacgaatgggcgaaaaatcggctcaaaatgccctaaacagtatcgaaaaagcgaaa
aataccacccttccccgctttttgttctcattaggcattcgtgaagttggggaagcaact
gctttgaatttagctaaccatttcggttcacttgaagcaattcgccaagccactttcgag
caattaaaagaggtgcaagatgtaggcgaagtggtagcaaaccgcatcgttagcttctgg
caagaaccacataatgttgaagtagttgaagatttgattactcaaggcgtgcattgggaa
aatgtagttaaaattgaaattgtcgataatccattaaaagacaaaaacgtagtgttaact
ggcacactcatccaaatgacccgagatgaagccaaagctctattacaaagtctaggctgc
aaagtttcaggttcggtttcaagtaaaaccgattacctcatcgcaggtgaaaaagcaggc
tcaaagctaactaaggctcaggaattagggatacaaattctcagcgaacaaggatttatt
gagcttacaaaaggctaa
DBGET
integrated database retrieval system
