Mycoplasmopsis verecunda: SAM46_00285
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Entry
SAM46_00285 CDS
T09525
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mver
Mycoplasmopsis verecunda
Pathway
mver03030
DNA replication
mver03410
Base excision repair
mver03420
Nucleotide excision repair
mver03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAM46_00285 (ligA)
03410 Base excision repair
SAM46_00285 (ligA)
03420 Nucleotide excision repair
SAM46_00285 (ligA)
03430 Mismatch repair
SAM46_00285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mver03032
]
SAM46_00285 (ligA)
03400 DNA repair and recombination proteins [BR:
mver03400
]
SAM46_00285 (ligA)
Enzymes [BR:
mver01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAM46_00285 (ligA)
DNA replication proteins [BR:
mver03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAM46_00285 (ligA)
DNA repair and recombination proteins [BR:
mver03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAM46_00285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAM46_00285 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAM46_00285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAM46_00285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WPB54595
LinkDB
All DBs
Position
72612..74798
Genome browser
AA seq
728 aa
AA seq
DB search
MEKQDKKTKNSQKDTESNKPKKTTKSDLAKARIIELTKYLNELNNAYYNLDNPIVEDYIY
DQLLRELEELEIKYPNAIQPDSPTTKIGGVPSIEFEKYTHQKPMLSLAKAYNFEEIEKFV
ADIKSEINRSDIEFNLEPKIDGLSISLIYQNGKLIRAVTRGDGKVGEDVTKNAILIRSIP
KNIPYEKDIEIRGEIYVTKDKLIETNAQLEAEYEAKVNQYYEKLQNSDQNKKISMPKLQQ
FANTRNMASGTLRQKSSKLLIQRDLRVLMYDIVNPLEHNIYHQNKILDFIKELGLPTHEY
GYVENASANIINRINEFENYKDKFQYDCDGFVIKLNQLQYWDLLGKTAKFPKYAIAYKYK
TEEAYPIVSKIETTVGRTGKITYVAEFQDAVELNQTMVKKATLHNYDFIKNLNLNIGDQV
VVIKSGEIIPKIIDMKQKNTLGVFPKVLYCPACNSQLVEIQGIVDQFCENEECQSKYVKK
LIHFVSRKALNIMTLGDKIIEALFDAGIITDFISIFNLKNKREEMIQTLLMNPKSNETGL
LESKKVDKILESIEISRNVELYKVIYGLGIKNIGLEVAKLIANEINNLTELINLNLETLL
EINTIGPEIIESLKIYLSDDNNKKQLELLEQELKYIKEEKNTQTELLKGLSFAVTGKMAI
SREEMWKIIEDNSGIVHKAVTKKTNYLVYGQNVGDTKLQKANELGTKIISEDEFFEMIDR
KALEQKWK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacaagataaaaaaacgaagaattcacaaaaagacacagaatcaaataaacct
aaaaaaacaactaaaagtgatttagctaaagctagaattatagaattaacgaaatactta
aatgagttaaataatgcgtattacaatttagataatccgattgtagaagactatatatat
gatcaattactcagggaattagaagaactagaaatcaaataccctaatgcaattcaacct
gattcaccaactactaaaataggtggtgtccctagtatagaatttgaaaaatatactcat
caaaaaccaatgttatcattagcaaaagcttacaattttgaagaaattgaaaaatttgtt
gcagatattaagtcagaaattaaccgtagtgatattgaatttaatttagaaccaaaaatt
gatggattatcgatttcattaatctatcaaaatggaaaattaataagagctgtaactaga
ggcgatggaaaagtaggagaagatgttacaaaaaatgcaatattaattcgcagtatccca
aaaaacattccttatgaaaaagatatagaaatccgtggcgaaatatatgtaactaaagat
aaattaattgaaacaaatgctcaattagaagctgaatatgaagctaaagttaatcaatat
tatgaaaaattacaaaatagtgatcaaaacaaaaaaatatcaatgcctaaattacagcaa
tttgccaatacccgtaatatggcttcagggaccttaagacagaaatcttcaaaactgctt
attcaaagagatttaagagttttaatgtatgatattgttaatccacttgaacataatata
taccatcaaaataagatacttgattttataaaagaattaggacttccaacacatgaatat
ggatatgtggaaaatgcaagtgcaaatattattaatagaataaatgagtttgaaaattat
aaagataaatttcaatatgattgtgatggatttgttattaaactaaatcaattacaatat
tgagatttattaggaaaaacagctaaatttccaaaatatgctatagcttataaatataaa
acagaagaagcctatccgatagtgtctaaaattgaaacaactgttggaagaactgggaaa
ataacttatgtagcagagtttcaagatgctgttgaattaaatcaaacaatggtaaaaaaa
gctacattacataattatgattttattaagaatttaaatcttaatattggcgatcaagta
gttgttattaaatcaggtgaaatcattcctaaaataatagatatgaaacaaaaaaatact
cttggagtatttcctaaagtattatattgtccagcatgtaattcgcaattagttgaaatc
caaggtattgtagatcaattttgcgaaaatgaagaatgccaatctaagtatgtaaaaaaa
ctaatccattttgtatccagaaaagctttaaatataatgactcttggagataaaataatt
gaagctttatttgatgctggtattattacagattttatttcgatatttaatcttaagaac
aaaagagaagaaatgattcaaactcttttaatgaatccaaaatcaaatgaaactggatta
cttgaaagtaaaaaagttgacaagattcttgaatccattgaaattagcagaaatgtggaa
ttatataaagtaatatatggacttggaattaaaaatattggtcttgaagttgctaaattg
attgctaatgaaataaataatttaacagaattgattaatttaaatttagagacactatta
gaaattaatacaattggtcctgaaataattgaatcattaaaaatatatttaagtgatgat
aataataaaaaacaattagagttattagaacaagaattgaaatatataaaagaagaaaaa
aacactcaaacagaattattaaaaggattaagttttgcggttacaggtaaaatggcaatt
tcacgtgaagaaatgtgaaagataatagaagataattctggtattgttcataaagctgta
actaaaaaaacaaattatcttgtttatggccaaaatgttggcgatacaaaattacaaaaa
gccaatgaattaggaactaaaataatttcagaagatgaattctttgaaatgattgataga
aaagctctagagcaaaaatgaaaataa
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