Myxococcus virescens: ACN6A1_08690
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Entry
ACN6A1_08690 CDS
T11273
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mvh Myxococcus virescens
Pathway
mvh03030
DNA replication
mvh03410
Base excision repair
mvh03420
Nucleotide excision repair
mvh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACN6A1_08690 (ligA)
03410 Base excision repair
ACN6A1_08690 (ligA)
03420 Nucleotide excision repair
ACN6A1_08690 (ligA)
03430 Mismatch repair
ACN6A1_08690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvh03032
]
ACN6A1_08690 (ligA)
03400 DNA repair and recombination proteins [BR:
mvh03400
]
ACN6A1_08690 (ligA)
Enzymes [BR:
mvh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACN6A1_08690 (ligA)
DNA replication proteins [BR:
mvh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACN6A1_08690 (ligA)
DNA repair and recombination proteins [BR:
mvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACN6A1_08690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACN6A1_08690 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACN6A1_08690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACN6A1_08690 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XWU87727
LinkDB
All DBs
Position
complement(2023561..2025579)
Genome browser
AA seq
672 aa
AA seq
DB search
MDDFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSLQTPDS
PTQRVGGAAAEEFGEVVHRAPMLSLANIFEDQGLIEFDERIRKLVGLPGIAYVCEPKLDG
LAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDGVKVPDVLEVRGEVF
IRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGDGVPV
FKTHIEKLEYLKTLGLPINQYRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVDDEDQ
RKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVTVARA
TLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPFEFPKHCPVCDAVAT
KDEDGAIIRCTGASCPAQLVEKIRHFASRLAMDIEGLGDKLAAQLVSTGRVKAFADLYAL
TKEDLLKLERMGDKSADNLIASLERSKQTTQRRFLYSLGIRHVGDATAKALAEAFPRSEM
LFEASLEDISRVKDVGPIMAQVIHTFFQEPQNQEAIRALLAAGVQPAAPQVATGGPFVGK
SVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILD
EQAFLHMLQTNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacttccagaaagccgcagcccgagcccgtgagctccaccgtgagctggcgcac
cacaactaccgttactacgtcctcgactcgcccgaggtcagcgacgcgcaatacgacaag
ctgatgcgcgagctgcaggacctggaggcgaagcacccgagcctccagacgccggattcg
cccacccagcgcgtgggcggcgcggcggccgaggagtttggcgaggtggtgcaccgggcg
cccatgctctcgctggccaacatcttcgaggaccagggcctcattgagttcgacgagcgc
atccgcaagctggtgggcctgccgggcatcgcctacgtctgcgagcccaagctggacggg
ctcgccatcgcgttgcgttacgaaaagggcgcgttcgtccagggcgccacccggggcgac
ggcaccaccggcgaggacgtcacctcgaacctgcgcaccatccgcagcctgcccatgtcg
ctgtttccccaggacggcgtgaaggtgccggacgtgctggaggtccgcggggaggtcttc
atccgcaagaaggacttccagaagctcaacgagaagcgcgaggaggaaggcgagccgctc
ttcgccaacccgcgcaacgccgccgcgggcagcctgcgccagttggacccgcggatgacg
gccgcccgacccctctccgtgttcctctacgaatgcgtcccgggcgacggcgtgcccgtc
ttcaagacgcacatcgagaagctggagtacctcaagacgctgggcctgcccatcaaccag
taccgccgcgccgagggcctggagggcgtgcgccaggcctatgacgcctccctcaagggc
cgccacgagctgcccttcgaggtggacggcatggtggtgaaggtggatgacgaggaccag
cgcaagcgcctgggccaggtctccaagagcccccgctgggcggtggcgtacaagttccct
ccggaggaggagtccacggaggtgatggacatcggcatccaggtgggccgcacgggcgcg
ctgacgccggtggcgcacctcaagccggtgaaggtgggcggcgtcacggtggcgcgcgcc
acgctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgccggtgacgtgattccggaaatcgtctccgtggtgctgtccaagcgccct
gcggactccgcgcccttcgagttccccaagcactgccccgtctgcgatgcggtggcgacc
aaggacgaggacggcgccatcatccgctgcacgggcgcctcctgccccgcgcagctggtg
gagaagatccgccacttcgccagccgcctggccatggacatcgaagggctgggcgacaag
ctggccgcgcagctggtgtccaccggcagggtgaaggcgttcgcggacctctacgcgctc
accaaggaggacctgctgaagctggagcgcatgggcgacaagagcgcggacaacctcatc
gcgtcgctggagcgctccaagcagaccacgcagcgccgcttcctctattccctgggcatc
cgccacgtgggcgacgccaccgccaaggcgctggcggaggccttcccccggtcggagatg
ctcttcgaggccagcctggaggacatctcccgcgtgaaggacgtgggccccatcatggcc
caggtcatccacaccttcttccaggagccccagaatcaggaggccatccgcgcgctgctg
gcggcgggggtccagcctgcggcgccccaggtcgccacgggaggccccttcgtgggcaag
tcggtggtgctcaccggcgcgatgacgggtatgacacgggagcaggccaaggaagaggtc
gagcgccggggcggcaaggtcgccggaagtgtctcgcgcaagaccgatttcgtcgtggcc
ggtgaggatgcgggcagcaagctgaagaaggcccaggaactcggggtaagaatcctggac
gagcaggcgttcctgcacatgttgcagacgaacgcctag
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integrated database retrieval system
