Mannheimia varigena USDA-ARS-USMARC-1296: X808_5580
Help
Entry
X808_5580 CDS
T03027
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03030
DNA replication
mvi03410
Base excision repair
mvi03420
Nucleotide excision repair
mvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X808_5580
03410 Base excision repair
X808_5580
03420 Nucleotide excision repair
X808_5580
03430 Mismatch repair
X808_5580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvi03032
]
X808_5580
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_5580
Enzymes [BR:
mvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X808_5580
DNA replication proteins [BR:
mvi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X808_5580
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X808_5580
NER (nucleotide excision repair)
GGR (global genome repair) factors
X808_5580
MMR (mismatch excision repair)
DNA ligase
X808_5580
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X808_5580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AHG75081
UniProt:
W0Q955
LinkDB
All DBs
Position
complement(601988..604045)
Genome browser
AA seq
685 aa
AA seq
DB search
MSLFSQGSLFEENATPALVEQIEQLRQTLRQYEHEYHVLDTPSVPDAEYDRLMNELKNIE
WQHPELITADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFGDDDLDGFLRRMESYIIANP
NELTFCCEPKLDGLAVSILYENGLLTRAATRGDGTTGEDITANIRTIRNIPLKLNTLNPP
ARLEIRGEVFMPQAGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY
GIGIYESDDELPNTQFERLQWLKSLGIPVNNEIRLAQGKTELLAYYAEIQAKRPTLGYDI
DGTVLKVNDIALQEQLGFISRSPRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLE
PVFVAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQITGVVAERRPENAKKIEF
PTACPICNSAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMA
RELIKTPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEAT
ALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLITQGVHWE
NVVKIEIVDNPLKDKNVVLTGTLTQMTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAG
SKLTKAQELGIQILSEQGFIELTKG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctttatttagccaaggctctttatttgaagaaaatgcaacaccagcgttagttgag
caaatcgaacaacttcgtcaaacgttacgtcaatacgagcatgaatatcatgttttagat
actcccagtgtgccagatgcggaatatgaccgcttaatgaatgagctgaaaaatattgaa
tggcagcacccagaactgattaccgcagattcgccaacacaacgggtgggagcaaaacca
ttggcaggctttgctcaagtgacgcacgaaattccaatgctttcgttagataacgccttc
ggtgatgacgatctagatggctttttacgccgaatggaaagctatattattgccaatcca
aatgagttaacattttgctgcgagccgaaattagacggtttagccgtaagtattttgtat
gaaaacggcttacttacccgtgcagctacccgaggcgatggcacaacaggcgaagatatt
accgccaatatccgtaccattcgtaatattccattaaaactaaacacgctcaatccacca
gctcgtttagaaattcgtggtgaagtgtttatgccacaagcgggctttaatgagttaaat
gaaaaagccttagccaaaggcgagaaaacctttgctaaccctcgtaatgcggcagcaggt
tcgttaagacagttagatccaaaaattactcgccaacgcccactcgtgctaaatgcttac
ggtattggcatttatgaaagtgatgatgaattgccaaacactcagtttgagcgtttgcaa
tggctcaaatcgcttggcatacctgtcaataatgaaatccgcttagctcaaggcaaaaca
gaactcttggcgtattatgccgaaatccaagctaaacgcccaacgctaggctatgatatt
gatggcacagtattgaaagtcaatgacattgccttacaagagcaacttggttttatctct
cgctccccacgctgggcaattgcttacaaattccctgcacaggaagaaatgactattttg
aaagaagtagatttccaagtaggaagaacaggggcaatcacgcctgttgcaaaattagag
cctgtgtttgtagcaggtgtaacagtaagcaatgctacgctacataatggcgatgaaatt
gaacgtttaggcattgtgattggcgataccgtgattattcgccgtgcaggcgatgttatt
ccacaaattacaggggtggttgctgaacgccgccctgaaaatgcaaaaaaaattgaattt
ccgaccgcttgtccaatctgtaattcagcggtggtgcgtgtggaaggcgaagccgtagca
cgctgcactggcggactgttctgcggagcccaacgcaaagaagcgttaaaacatttcgtt
tctcgcaaagcgatggatattgacggcgtaggcgaaaaactgattgagcagttaatggct
cgtgagttaattaaaactccagccgatctattcaagctcgatcatacaactttaatgcga
ttagaacgaatgggcgaaaaatcggctcaaaatgccctaaacagtatcgaaaaagcgaaa
aataccacccttccccgctttttgttctcattaggcattcgtgaagttggggaagcaact
gctttgaacttagctaaccatttcggttcacttgaagcaattcgccaagccactttcgag
caattaaaagaggtgcaagatgtgggcgaagtggtagcaaaccgcatcgttagcttctgg
caagaaccacataatgttgaagtagttgaagatttgattactcaaggcgtgcattgggaa
aatgtagttaaaattgaaattgtcgataatccattaaaagacaaaaacgtagtgttaact
ggcactctcacccaaatgacccgagatgaagccaaagctctattacaaagtctaggctgc
aaagtttcaggttcggtttcaagtaaaaccgattacctcatcgcaggtgaaaaagcaggc
tcaaagctaactaaggctcaggaattagggatacaaattctcagcgaacaaggatttatt
gagcttacaaaaggctaa
DBGET
integrated database retrieval system
