Candidatus Minimicrobia vallesae: KOY49_03415
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Entry
KOY49_03415 CDS
T07770
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mvl
Candidatus Minimicrobia vallesae
Pathway
mvl03030
DNA replication
mvl03410
Base excision repair
mvl03420
Nucleotide excision repair
mvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KOY49_03415 (ligA)
03410 Base excision repair
KOY49_03415 (ligA)
03420 Nucleotide excision repair
KOY49_03415 (ligA)
03430 Mismatch repair
KOY49_03415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvl03032
]
KOY49_03415 (ligA)
03400 DNA repair and recombination proteins [BR:
mvl03400
]
KOY49_03415 (ligA)
Enzymes [BR:
mvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KOY49_03415 (ligA)
DNA replication proteins [BR:
mvl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KOY49_03415 (ligA)
DNA repair and recombination proteins [BR:
mvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KOY49_03415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KOY49_03415 (ligA)
MMR (mismatch excision repair)
DNA ligase
KOY49_03415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KOY49_03415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QWQ31217
UniProt:
A0A8F1MAE7
LinkDB
All DBs
Position
complement(501745..503790)
Genome browser
AA seq
681 aa
AA seq
DB search
MSICSTERWLKVTPKKPRIDEIKDLLNRYSYEYYTLDKPSVSDAVYDSLMDELKKIESDH
PELITIDSPTQRVGNKLLDGFQKVEHARRMVSLSDVFDKSEVEAWIERTDKLIPGQRHEF
FTDIKMDGLACALIYVDGVLSQAVTRGDSFVGEDVTNNVRTIKNVPLRLREAAGFENFLH
GRTEIRGEIVMLKRDFEELNKRQKSLGLPTFANPRNLAAGTIRQLDPALVAARPLHFRGY
DVIRDDSSEVPTNSFAYEALTALGISRNQQASVFDNLSDVMKFVNEWSDKRHDLPFNTDG
LVIKINDREIYDNLGMVGKNPRGAVAYKYAAEEATTIVRDIVISIGRTGAATPVAVFDPV
VVAGTTVQHASLHNADEIERLDIRRGDTVVIFKAGDIIPQVESVLKELRPADSEPIDYEA
ELKRQYPELEFVRPEGEAVYRVKGSSGPLILKRALAHFASKGALDIDTLGEKNVEVLIDN
GLVGDLADIFTLTKDDLLKLDRFADISAQKLISAIADKKSPELERFLYGLGIRHIGAQTA
IDLTNHFESMENLAKATIDDLRQVDGVGEIVAESVVAWFADEDNVKLLNKFTELGVIPQF
NKKSGGLGGKSFVVTGTLKSMGRDAAADKIRNLGGVFQTAVSKDTTYLVAGGKVGASKLK
KAEQYGTKIIDEEELLQIIKE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttgttctacagaaaggtggttgaaagtgacaccaaaaaaaccaagaattgac
gaaattaaagacctgttaaatcgttatagctacgaatattacaccttagataagccgagt
gtgagcgatgcggtttatgacagcctgatggatgagctgaagaaaattgaatcggatcat
ccggaattgattactattgatagtcctacgcagcgagttggaaataagctgctcgacggt
tttcaaaaagtagagcacgcgcgccgaatggtcagtttgagtgatgtttttgataaaagt
gaagttgaggcgtggattgagcgaactgataaattgataccgggtcagcgacatgaattt
tttacggatataaaaatggatggattggcgtgtgcgttgatttatgtcgacggcgtgttg
tcgcaagctgtgacacgtggcgatagttttgttggcgaagatgtaacgaataatgttcgg
actattaaaaacgtaccgcttcgtctgcgtgaagcggcgggttttgagaattttttacat
ggtcggacagagattcgtggcgaaattgtcatgctgaaacgggattttgaggagcttaat
aaaaggcagaaatctctagggctgcctacatttgctaatccgcgcaatttggctgcgggg
acaattcgtcaattagatcctgcgctggtggcggcgcgcccgttgcattttcgcggatat
gatgtgattcgcgatgatagttcggaagttccgacgaatagttttgcttacgaggctttg
acggcgctggggatttctcgtaatcagcaagccagtgtttttgacaatttgtctgacgtg
atgaaatttgttaatgaatggagcgacaagcgtcatgatttgccgtttaatacggacggg
ctggttattaagattaacgatcgagagatatacgacaatctcggtatggtgggtaaaaat
ccgcgcggggcggtggcttataagtatgcggctgaagaggctacgacgatcgttcgagat
atagtcatttctattgggcgaactggtgcggcgactccggtggctgtgtttgatccagtg
gtggtggcgggaactacggtgcagcacgctagtttgcataatgccgatgaaattgagcgt
ttggatattcggcgaggcgacactgtggtgatttttaaggctggcgatattattccgcaa
gttgagagtgtcttgaaggaattgcgacctgcagattctgagccaattgattatgaagca
gaattaaaacggcaatatccggagttggaatttgtgcgaccggaaggtgaagctgtttat
cgagttaagggctctagtggtccgctgattttgaagcgagctctggcgcatttcgcgtct
aagggtgcgcttgatattgatacgcttggcgaaaagaacgtggaagttttgattgacaac
ggtttggtcggcgatttggcggatattttcacgcttactaaagacgatttgttaaagttg
gatcggtttgctgatatttctgcgcaaaagttaatctcggcaattgctgataaaaaaagt
ccagaattagagcgatttttgtacggtctgggaattcgtcatattggcgcgcaaacggcg
attgatttgacgaatcattttgagagtatggaaaatttggcgaaagcgacgattgatgat
ttgcgacaagttgatggcgtgggtgaaattgttgctgaatctgtagtggcgtggtttgct
gatgaggataatgtaaaattgctcaataaattcacagaattgggagttattcctcagttt
aataaaaagtctggtggtctgggtggaaaaagttttgtcgtcacgggtactctgaaatct
atgggacgcgacgctgctgcggataaaattcgtaatctcggtggagtttttcaaaccgca
gtttctaaagacacgacatatttggtggctggtggtaaggttggtgctagcaaattgaaa
aaggctgagcaatacggcacgaaaatcattgacgaagaagaacttctacaaattataaaa
gaatag
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