Mycolicibacterium wolinskyi: ACOI2T_24065
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Entry
ACOI2T_24065 CDS
T11859
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mwj Mycolicibacterium wolinskyi
Pathway
mwj03030
DNA replication
mwj03410
Base excision repair
mwj03420
Nucleotide excision repair
mwj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mwj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACOI2T_24065 (ligA)
03410 Base excision repair
ACOI2T_24065 (ligA)
03420 Nucleotide excision repair
ACOI2T_24065 (ligA)
03430 Mismatch repair
ACOI2T_24065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mwj03032
]
ACOI2T_24065 (ligA)
03400 DNA repair and recombination proteins [BR:
mwj03400
]
ACOI2T_24065 (ligA)
Enzymes [BR:
mwj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACOI2T_24065 (ligA)
DNA replication proteins [BR:
mwj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACOI2T_24065 (ligA)
DNA repair and recombination proteins [BR:
mwj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACOI2T_24065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACOI2T_24065 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACOI2T_24065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACOI2T_24065 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
XQS37834
LinkDB
All DBs
Position
complement(4859941..4862052)
Genome browser
AA seq
703 aa
AA seq
DB search
MSAKQTGDPETVLPEQPDADVRRRWQELADEVREHQFRYYVRDAPIISDAEFDKLLRELQ
ALEDSHPELRTPDSPTQLVGGAGFATDFAPAEHLERMLSLDNVFDSDELTAWAARISGET
GDAAHYLCELKIDGVALALVYRNGRLVRAATRGDGRTGEDVTLNARTIDDIPEQLTASDE
FPVPDVLEVRGEVFFRVSDFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGLGRVEGNAGFTFKTLHDAYLALGAWGLPVSEHTVRVSGVAEVAERIAYWGEHRHD
VEHEIDGLVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVSVGRTGRVTP
FAYMEPVKVAGSTVGLATLHNATEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE
HEFVMPTTCPECGTVLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEA
ATALLQAGVIADEGDLFTLTADELLRTELFTTKAGELSANGKRLLANLDKAKAQPLWRVL
VALSIRHVGPTAARALATEFASLDAIVEASEERLAGVEGVGPTIAAAVVDWFTVDWHRAI
VDKWRAAGVRMADERDASVERTLEGLSIVVTGSLPGFSRDEAKEAIISRGGKAASSVSKK
TAYVVAGDAPGSKYDKAVELGVPILDEDGFRQLLAEGPPPASE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgaagcaaaccggagatcccgagacggtgctgcccgaacagcccgacgccgat
gtgcggcgacgctggcaggagttggccgacgaggtacgtgagcaccagttccggtactac
gtcagagacgcgccgatcatctccgacgccgagttcgacaagctgctgcgtgaactgcag
gccctcgaggattcacacccagagctgcgcaccccggattcgcccacgcagctcgtgggt
ggcgccgggttcgcgaccgacttcgctccggccgagcatctggagcgaatgttgtcgctg
gacaacgtcttcgattccgatgagctgactgcctgggctgcccgcatcagcggcgagacc
ggggatgccgcccactacctgtgcgagctgaagatcgacggcgtcgcgttggcgctcgtc
taccggaacggccggctcgtgcgggcggccacccgtggtgacggccgcaccggtgaggac
gtcacgctcaacgcccgcacgatcgacgacatccccgagcagctcaccgcatccgacgag
ttcccggtgccggacgtcctcgaggtgcgcggtgaggtcttcttccgggtgtccgacttc
gaagacctcaatgcgggactggtcgccgagggcaaaccaccgttcgccaacccgcgcaac
agtgccgccggctcactgcggcagaagaacccggcggtcaccgcgcggcgcaagctgcgg
atgatctgtcacgggctcggccgtgtggagggcaatgcagggttcaccttcaaaacgctg
cacgacgcctacctcgcgctcggtgcgtgggggctgccggtctccgaacacaccgtccgg
gtgtccggcgtcgccgaggtcgccgaacggatcgcgtactggggcgaacaccgccacgac
gtcgaacacgaaatcgacggcctcgtcgtcaaagtcgacgaggtcgcgctgcagcgccgg
ctgggctcgacctcgcgggcgccccgctgggccgtggcctacaagtacccgcccgaggaa
gccaccaccaagctgctcgacatccgggtcagcgtggggcgcaccggccgcgtcacgccg
ttcgcctacatggaaccggtcaaggtcgccggctcgacggtcggactcgccaccctgcac
aacgccaccgaggtcaaacgcaaaggcgtgctgatcggggacaccgtggtgatccgcaaa
gccggcgacgtgatccccgaggtgctcgggccggtcgtggacctgcgcgacggttccgaa
cacgagttcgtcatgcccacaacgtgtcccgagtgcgggacggtgctggcgccggccaag
gagggcgacgccgacatccgctgtccgaacacccgcagctgcccggcacagttgcgtgag
cgggttttccacgtcgccgggcgcggtgcattcgacatcgaaggcctgggctacgaagcc
gcgaccgcgttgctgcaggccggcgtcatcgctgacgaaggggacctgttcaccctcacc
gccgacgaactactgcgcaccgagctgttcaccaccaaggccggtgagctgtcggccaac
ggcaagcggctgctggccaatctcgacaaggcgaaggcgcagcccctgtggcgcgtcctc
gtggccctgtccatccgccacgtcggaccgaccgcggcgcgcgcgctggcgaccgagttc
gcgagcctagacgcgatcgtcgaagcctcggaggaaaggttggccggcgtcgagggcgtc
gggccgacgatcgcggccgccgtggtcgattggttcaccgtcgactggcaccgggcgatc
gtcgacaagtggcgcgcggccggcgtgcggatggccgacgagcgcgacgccagcgtggag
cgcacgctcgaaggcctgtcgatcgtggtcactggttcgttgccgggcttttcgcgcgac
gaggccaaggaagcgatcatcagccgcggtggcaaggccgccagttcggtctcgaagaag
acggcctacgtggtcgccggggatgctcccggatcgaaatacgacaaagccgtcgaactg
ggcgtgccgattctcgatgaggacggattccggcaactcctggccgagggtccgccgcca
gcttcggaatag
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