Microbacterium wangruii: QNO26_08470
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Entry
QNO26_08470 CDS
T11147
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mwn Microbacterium wangruii
Pathway
mwn03030
DNA replication
mwn03410
Base excision repair
mwn03420
Nucleotide excision repair
mwn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mwn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNO26_08470 (ligA)
03410 Base excision repair
QNO26_08470 (ligA)
03420 Nucleotide excision repair
QNO26_08470 (ligA)
03430 Mismatch repair
QNO26_08470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mwn03032
]
QNO26_08470 (ligA)
03400 DNA repair and recombination proteins [BR:
mwn03400
]
QNO26_08470 (ligA)
Enzymes [BR:
mwn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNO26_08470 (ligA)
DNA replication proteins [BR:
mwn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNO26_08470 (ligA)
DNA repair and recombination proteins [BR:
mwn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNO26_08470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNO26_08470 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNO26_08470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNO26_08470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RNA_lig_T4_1
DUF4107
Motif
Other DBs
NCBI-ProteinID:
WIM27208
LinkDB
All DBs
Position
complement(1786967..1789291)
Genome browser
AA seq
774 aa
AA seq
DB search
MTDAADFTPAPLDEARAEAGDLTERILNARDAYYGENAEIVDDATYDGWMRRLEQLEREH
PELQGQDSPTQTVGAAQSSMFAPVEHAERMLSLDNVFSVEELRDWCMKTQASAGRRVQWL
TELKIDGLAISLRYEHGVLTSAATRGDGRVGEDVTVNALRVTGIPSQLSGSGHPSLVEVR
GEVFIPVAAFDELNALQARLRDRVLAEALARGVDEEKSARSAARRFPAFANPRNAASGGL
RQQLEKKSGLELKAGQARLQSLRLFVHGIGAWENPPVSTQSEVYALLADWGLPTSPYFRT
YDDVVGVTSFVEQYGEHRHAVEHEIDGVVVKVDELDLHGELGATSRAPRWAIAYKYPPEQ
VNTKLLDIVVSVGRTGRATPFAVMAPAQVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRK
AGDVIPEVLGPVVELRDGSERAFVMPADCPECGTPLAPAKEGDIDLRCPNTRACPAQVRG
RVEHIGSRGALDIEALGEVTAAALTQPSVPEMPPLQTEAGLFDLTLEQLVPIEVMVRDAE
TGEPRVDDTTGEPVRRAPFRRNPSAAEKKQGLTGPQPSAQALTLLDELEKAKTKELWRFL
VALNIRHVGPVAARALAQWFGSIAAIRAASRDELAAVDGVGGIIADSLVDWFAVDWHREI
VERWEAAGAQLATPGHPGPGAAASSGGVLEGVTVVATGSLEGYSREGAQEAIMAAGGKAA
SSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFKILVEQGPDALGPPPAAE
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatgccgctgacttcacgcccgcgcccctcgacgaagcccgagccgaggcgggt
gatctcaccgagcgcatcctgaacgcgcgcgacgcgtactacggcgagaacgccgagatc
gtcgacgacgcgacgtacgacggatggatgcggcgcctcgagcagctcgagcgcgagcac
cccgagctgcagggtcaggattcgccgacgcagaccgtcggcgccgcccagtcgtcgatg
ttcgcgccggtcgagcacgccgagcgcatgctcagcctcgacaacgtcttcagcgtcgag
gagctgcgcgactggtgcatgaagacgcaggcctcggccggccgccgcgtgcagtggctg
acggagctgaagatcgacggcctcgcgatcagcctgcgctacgagcacggggtgctcacc
tctgccgccacacgcggcgacgggcgggtgggcgaggacgtcaccgtcaacgcgctgcgc
gtgaccggcatcccctcgcagctgtcggggagcgggcatccgtcgctggtggaggtgcgc
ggcgaggtgttcatcccggtcgccgcgttcgacgagctcaatgccctgcaggcgcgcctg
cgcgaccgtgtgctcgccgaggcgctggcccgcggcgtcgacgaggagaagtccgcgcgc
agcgccgcgcgccggttcccggccttcgccaatccccgtaacgccgctagcggtggcctg
cgtcagcagctggagaagaagagcgggttggagctcaaggcgggtcaggcacgcctgcag
tcgctgcgcttgttcgtgcacggcatcggggcatgggagaacccgccggtgagcacgcag
agcgaggtctacgcactgctcgccgactgggggctgccgacgagcccgtacttccgcacg
tacgacgacgtcgttggggtgacctcgttcgtcgagcagtacggcgaacaccggcacgcg
gtcgagcacgagatcgacggcgtggtggtgaaggtcgacgagctcgacctgcacggcgaa
ctcggcgccaccagccgggcgccgcgctgggcgatcgcctacaagtacccgccggagcag
gtgaacacgaagctgctggacatcgtggtgtcggtgggtcgcaccggtcgggccaccccg
ttcgcggtcatggcgccggcgcaggtggcggggagcgtcgtgcgccaggcgacgctgcac
aatcaggatgtcgtcaaggcgaagggcgtgctcatcggcgacacggtggtgctgcgcaag
gcgggcgacgtcatccccgaggtgctgggcccggtcgtggagctgcgtgacggctcggag
cgcgcgttcgtcatgcctgcggactgtcccgagtgcggtacgccgctggcgcccgcgaag
gagggcgacatcgacctgcgctgcccgaacacccgcgcgtgcccggcgcaggtgcgcggg
cgcgtggagcacatcggctcgcgtggcgccctcgacatcgaggcgctgggcgaggtgacc
gctgccgccttgacccaacccagtgtgcccgagatgcccccgctgcagaccgaggcggga
ctgttcgacctcaccctggagcagctcgtgcccatcgaggtgatggtacgcgatgccgag
accggcgagccgcgtgtcgacgacaccacgggcgagccggtgcggcgcgcccccttccgg
cgcaaccccagcgcggccgagaagaagcagggcctcaccggcccgcagccgtccgcgcag
gcgctgaccctgctcgacgagctcgagaaggccaagaccaaggagctgtggcggttcctc
gtggccctgaacatccgccacgtcggcccggtcgcagcccgcgccctggcccagtggttc
ggttcgatcgccgcgatccgcgcggcctcccgcgacgagctcgccgccgtcgacggggtg
ggcggcatcatcgccgactctctcgtcgactggttcgccgtcgactggcatcgcgagatc
gtcgagcgctgggaagcggccggtgcccagctggccacgcccggtcacccgggccccggt
gccgcggcatcctccggcggggtgctcgagggcgtcacggtcgtggccaccggatcgctc
gagggctactcccgcgagggggcgcaggaggcgatcatggccgccggcggcaaggcggca
tccagtgtgtcgaagaagaccgacttcgtcgctgcgggacccggggcggggtcgaagctc
gccaaggccgagcagctcggcgtgcgcatcatcgatgcggcgcagttcaagatcctcgtc
gagcagggaccggacgcgctggggccgccgcccgccgcggaatga
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