Mycoavidus sp. B2-EB: MPB2EB_0628
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Entry
MPB2EB_0628 CDS
T09873
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
myco
Mycoavidus sp. B2-EB
Pathway
myco03030
DNA replication
myco03410
Base excision repair
myco03420
Nucleotide excision repair
myco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPB2EB_0628 (ligA)
03410 Base excision repair
MPB2EB_0628 (ligA)
03420 Nucleotide excision repair
MPB2EB_0628 (ligA)
03430 Mismatch repair
MPB2EB_0628 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myco03032
]
MPB2EB_0628 (ligA)
03400 DNA repair and recombination proteins [BR:
myco03400
]
MPB2EB_0628 (ligA)
Enzymes [BR:
myco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPB2EB_0628 (ligA)
DNA replication proteins [BR:
myco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPB2EB_0628 (ligA)
DNA repair and recombination proteins [BR:
myco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPB2EB_0628 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPB2EB_0628 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPB2EB_0628 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPB2EB_0628 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RUBY_RBDX
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBO59509
LinkDB
All DBs
Position
684207..686264
Genome browser
AA seq
685 aa
AA seq
DB search
MHNPVDNEKSERAARLRAQIEQHNYAYYVQDAPEISDAEYDRLFAELAAIETENPYLLTP
DSPTQRVNGQVAEGFQPVVHTVPMLSLNNGFNDEEIEAFDKRCAQGLYKTEPVTGLEYAC
ELKFDGLAVALRYVDGVLVQAATRGDGVRGEEITANIRTVHSIPLRLKGISIPALLEVRG
EVFMLKNAFEKLNQRQRVAGQKEFANPRNAAAGSLRQLNPKVTASRSLSFFAYGIGELAG
VAMPPTHQALLDWYLELGVPVCEKRAVVQGAAELLGFFKAMSEQRNTLPYEIDGVVYKLN
RLEEQQQLGFVSRAPRFALAHKFPAQEALTKLIAIEVNVGRTGAITPIARLEPVFVGGAM
VTNATLHNEDEVRRKDILIGDTVIVRRAGDVIPEVVSVLTERRPATAHGFEMPTECPVCG
SAIERLPGEAIARCTGALACAAQRKQALWHFAQRRALEIDGLGEKIIDQLVVQNLVHTPA
DLFKLSFATLVKLERFADKSAQNLLAALHQAKQTTLARFIYALGIRHVGESTALDLARYF
GALEPLIQAPREVLLEVNDVGPVVAESILQFFAQAHNLEVIEALRAAGVTWLEGPPAARP
SAGPLAGKTVVLTGSLLNFTREQVKAQLEAAGAKVAASVSSKTHYVIAGAEAGGKLAKAE
ALGIEVLDEDGLRQLLASVELSPEQ
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcataaccctgtagacaatgaaaaatctgagcgcgcggccaggttgcgcgcgcaaatc
gagcaacacaattacgcttattacgtacaggacgctccggaaatctctgatgccgaatac
gaccgattgtttgccgagttagcggccattgaaacagagaacccttatttgctgacgccc
gattctcctacgcaacgcgtaaacggccaggtcgccgaaggctttcagccagtcgtgcat
accgtgccaatgttgtcattaaataatggttttaatgatgaagaaattgaagcatttgat
aaacgttgcgctcaagggctgtataagaccgaaccagtaacaggcttagagtatgcttgt
gaacttaagtttgatggtcttgcggtggcattgcgttatgtcgatggcgtactcgtgcaa
gcggcaacccggggcgatggggtgcgaggagaagagattaccgccaatattcggactgtg
cactcgattccactacgtttgaaaggcatctctatccctgccttgcttgaggtgaggggg
gaggtgtttatgctgaaaaacgcttttgaaaaattaaatcaacgccagcgggtagcgggt
cagaaagagtttgctaatccacggaatgcggcggcaggcagcttgcgccagctcaatccc
aaagttaccgcgagccggtcgttgtcgttttttgcctatgggatcggtgagcttgccggg
gtggccatgccgccaacgcatcaagctttgcttgattggtatttggagctaggcgttccg
gtttgtgagaagcgtgcggtcgtacagggcgcagcggaattactcggcttttttaaagcg
atgagcgagcaacgcaatacattgccttatgagattgatggcgtcgtctataaattgaat
cggttggaagagcaacagcagcttggttttgtttcacgcgcaccgcgctttgcgttagcc
cataaatttcctgcgcaagaagctttgaccaagctgattgcaatcgaggtcaatgtgggc
cgcactggtgctatcaccccaatcgcgcggcttgagccggtgtttgtgggaggggccatg
gtgaccaatgccaccttgcacaatgaagatgaggtgcggcgcaaggatattttgattggc
gatacggttattgtgcggcgcgcgggcgatgtgattccggaagtggtaagcgttttaacc
gagcggcggcccgccacagcacacggttttgaaatgccaaccgaatgcccagtatgtgga
tctgcgattgagcgcttacccggcgaggcgattgctcgttgtaccggcgccttagcgtgt
gcggcacagcgtaagcaagcgctttggcactttgctcagcggcgcgcgctagagattgat
ggtttgggagaaaaaattattgatcagctcgtcgtgcaaaacctggtgcatacgcctgct
gatttgtttaagctaagctttgcaacgctggttaaacttgagcgttttgctgataaatct
gcgcaaaatctactggctgcattacaccaggctaaacagactacattggcgcgctttatc
tatgcgcttggcatccgtcacgtgggcgaatcaaccgcgcttgatttagctcgttatttt
ggcgcgcttgaacctctgatacaggcaccgcgtgaagtgctgctagaagtcaatgacgtg
gggccggtggtggcggaatccatccttcaattctttgctcaagcgcataatcttgaggtg
attgaagcattgcgtgcagcaggtgtgacctggcttgaggggccgcctgctgcgcggcct
agcgctgggcccttggccggtaagacggtagtcctgacgggaagtctactgaatttcacg
cgtgagcaagtcaaggcgcaactggaagccgcaggtgcaaaagtagcggcttcagtttcc
agtaaaacccattatgtgattgctggggcagaggcgggtggcaaacttgcgaaagccgag
gcgctgggtattgaagtgttggatgaagacggtttgcgtcagttgttggcaagtgtagag
ctgtcgccagagcaatag
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