Mycobacterium sp. EPa45: AB431_10250
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Entry
AB431_10250 CDS
T03960
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mye
Mycobacterium sp. EPa45
Pathway
mye03030
DNA replication
mye03410
Base excision repair
mye03420
Nucleotide excision repair
mye03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB431_10250
03410 Base excision repair
AB431_10250
03420 Nucleotide excision repair
AB431_10250
03430 Mismatch repair
AB431_10250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mye03032
]
AB431_10250
03400 DNA repair and recombination proteins [BR:
mye03400
]
AB431_10250
Enzymes [BR:
mye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB431_10250
DNA replication proteins [BR:
mye03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB431_10250
DNA repair and recombination proteins [BR:
mye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB431_10250
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB431_10250
MMR (mismatch excision repair)
DNA ligase
AB431_10250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB431_10250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AKK26995
LinkDB
All DBs
Position
2162006..2164111
Genome browser
AA seq
701 aa
AA seq
DB search
MAPETSDPEADPIDPDVRRRWQDLAEEVREHQFRYYIKDAPIVSDADFDALFNELLALEE
RFPELRVADSPTQLVGGAGFATDFAEAAHLERMLSLDDVFNTEELAAWSNRVEAEIGRDP
QYLCELKIDGVAIALVYRNGRLERAATRGDGRVGEDVTNNARTIDDIPESLTASEEYPVP
ALLEVRGEVFFRLADFENLNASLVEEGKDPFANPRNSAAGSLRQKNPAVTAKRRLRMICH
GLGRTEYSGGFAPASLHDTYRALKAWGLPVSDHTTQVVGLAAVEEKIVYWGERRHEIEHE
IDGIVVKVDDFALQRRLGATSRTPRWAVAYKYPPEEAQTKLLDIKVNVGRTGRVTPFAVM
TPVKIAGSTVGMATLHNGSEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFE
MPTHCPECGTPLAPAKEGDVDIRCPNARSCPAQLRERVFHLAGRGGLDIEGLGYEAATAL
LNAKVITDEGDLFSLTSADLLTSDFFKTKDGALSANGARFLINLQQAKDRPLWRILVALS
IRHVGPTAARALAVAFGSLDAIMAASEEQLADVEGVGPTIAAALVEWFAVDWHRAIIDKW
RAAGVRMEDVRDASITPTLQGLSIVVTGSLPNFSRDEAKEAIISRGGKAVGSVSKKTSYV
VAGDAPGSKYDKAVELGVPILDEDGFRALLEDGPPPAEADG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggctccagagacgtccgatcccgaggctgatcccatcgatccggatgtgcggcggcgc
tggcaggatctcgccgaagaggtgcgtgagcatcagttccgctactacatcaaggacgcg
ccgatcgtctccgacgcggactttgacgcgctcttcaacgaactcctggccctcgaagag
cgcttccccgagctgcgggtagccgactcgccgactcagctggtcggcggcgccggcttc
gccaccgacttcgccgaggccgcgcacctggagcggatgctcagcctcgacgatgtgttc
aacaccgaggagctggcggcgtggtccaaccgggtggaggccgaaatcggccgtgacccg
cagtacctctgcgagctcaagatcgacggcgtcgcgatcgcgctggtgtaccgcaacggt
cgactggagcgggcggccacccgtggcgacggccgggtcggtgaggacgtcaccaacaac
gctcgcacaatcgatgacatccccgaaagcctcaccgcctcagaggaataccccgttccc
gcgcttctcgaggtgcgtggcgaggtgttcttccggctcgccgacttcgagaacctcaat
gccagcctggtcgaagagggtaaggatcccttcgcaaatccgcggaacagcgccgcgggc
tcgcttcggcagaagaatccggcggtcaccgcgaagcggcggctgcggatgatctgccac
ggcctcggccgcaccgaatactcggggggctttgcgccagcctctctgcacgacacctac
cgcgcgctgaaggcctgggggctgccggtctccgaccacaccacgcaagtggtcggactc
gccgccgtcgaagagaagatcgtctactggggcgaacgccgccacgagatcgagcacgaa
atcgacggcatcgtcgtcaaagtcgacgacttcgccctgcagcgccggctcggcgccacc
tcgcgcacaccgcgctgggcggtcgcctacaagtacccgccggaggaggcccagaccaag
ctgctggacatcaaggtcaacgtgggacgcaccggccgcgtcaccccgttcgcggtcatg
acgccggtgaagatcgccggatccaccgttggcatggccaccctgcacaacggctcggag
gtcaagcgcaaaggtgtcctgatcggcgacacggtgatgatccgcaaagccggcgatgtc
atccccgaggtgctgggaccagtcgtcgacctgcgcgacggcaccgagcgtgaattcgag
atgcccacccactgcccggaatgcggcaccccactggccccggcaaaggagggcgatgtc
gacatccgctgcccgaacgcccgatcctgccccgcacagctgcgtgagcgggtcttccac
ctggctggccgcggtggactggacatcgaagggctgggctacgaggcggcgacggcgctg
ctcaacgccaaggtcattaccgatgaaggcgacctgttcagcctcaccagcgccgacctg
ctgacgtcagacttcttcaagaccaaggacggcgcgctctcggccaacggcgcccggttc
ctgatcaacctgcagcaggccaaggaccggccgctgtggcggatcctggtggcgttgtcc
atccggcacgtcgggccgaccgcggcgcgggcactggccgtcgcgttcggcagcctcgac
gcgatcatggcggcctccgaggagcagctcgccgacgtcgagggtgtcggaccgacgatc
gcggccgcgctcgtcgagtggttcgccgtcgattggcaccgcgcgatcatcgacaagtgg
cgggccgcgggcgtgcgaatggaagatgttcgcgacgcctcgattacccctacgctgcaa
ggactttcgatcgtggtcaccgggtcgttgccgaacttctcccgcgatgaggccaaggag
gccatcatcagccgcggcggcaaggcggtcggctcggtgtcgaagaagacctcgtacgtg
gtggccggggatgcgcccggctcgaagtacgacaaggccgtcgaactgggtgtgccgatc
ctcgacgaggatggtttccgcgccctgctggaggatgggcccccgccggcggaagccgac
ggctga
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integrated database retrieval system
