Mizuhopecten yessoensis (Yesso scallop): 110460513
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Entry
110460513 CDS
T05079
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58 isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
myi04054
]
110460513
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110460513
Pattern recognition receptors [BR:
myi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
110460513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
CARD_2
RIG-I_C
ResIII
Helicase_C
CARD
RIG-I_C-RD
DEXQc_Suv3
Cas3-like_C_2
AAA_19
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-GeneID:
110460513
NCBI-ProteinID:
XP_021369135
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MATNTNDDEHLQEKIDVYRLVLMECVIPTELLPSLTDVLSGPDASTIKNLTRQSSDRAGT
EHLLNVLVEKTEIRGRWRMLVNALKQHGYGTLSMILEGKMDLIDRDRNKRIIEIFMLPLQ
KIMKPLDILPSLIQKGVLSREDDENIEAEHRNHGMLAASALLLDRIYRKKSNWYDMFLQS
LAENDFGHLAEKIDPDFMKKWAIRNEEVIYQRGEPPDSSTMENYQSDDGEAMTDLKGLNL
SPNHQRDHTHDTNDTKKEENLNSTAKDSAGEEALTKLKQVQQTARQPTEHDELSGTCAES
SPMASNDQSEPVASVPPSIAVQDSSETIGSDLSLYRYQEELAKPGLEGHNSIVIAPTNSG
KTHVAIRIMQHHLRRGQGKVIFLVPTSALATQQRDRCHELLKCPVKVMTGESQAREKYID
MSVHLKNHDVIVATPQILVNCLLAKEDVTLQTFSLIVFDECHRTYEDTPYNAVMRIYWDE
KFTSAYVRLPQILGMTASLGSGQANSQSSANTWVKNIMANMDSQKLVTVKENIKELEENI
NNTDTEIIETKERRNKSFGNLVNDMMATIEGTINRLEGELKRPPTLRSGAQYTQWCSTLR
KQVTSLSTVDNDLHRSLKIYADYLEVYHRALLIYQDARVSDAVRYLKEELDEMYFEETAV
EADREMYGLFQEKQQLMENHDDGDQENPKLHEVQVRICTLFRDDPDSRAIIYVKTIELAR
SMEAWMNECPELQSLKAVRFVGAHAKVGIGGITKMEQDTILKAFRNGDHKVVIGTSVLEE
GLDVPRCNLVILYDHVTNEIQRVQTRGRIRRDNSHFVLIVSESGQAAQKELVNERREDMS
SEAIRLVQDEISRDPQAFYEKQQDQQREEKRKRDAVVLDEQKQLENNPVYEVKCNHCRGL
LFLSSDLRKIKVHHTVVARGMKDTLSPGPRGKPSFVDRDMEHGIAELYCKTCQIFIGSVN
KSMSLFFPMPRIDQITFSRDDVYKTCKKWKDVKKLFGIKTFCPIEDMRFILALPAEERDF
YTS
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaacacgaacgacgatgaacacttgcaagaaaaaatagacgtatatcggctt
gtgctgatggagtgtgtaatcccaacggaattactcccatcgttaaccgacgtgctgtca
ggtccagacgcttcaacaatcaaaaacttgactcgtcagagcagtgacagggctggtaca
gagcacctgttaaacgtcttggtagaaaagacggagatccgggggcgatggcggatgtta
gtgaatgcgctgaaacaacacggttatggaactctctcaatgattctagagggaaagatg
gatctgattgacagagaccgcaacaagagaatcatagagatatttatgttgccactgcaa
aagatcatgaaaccgctagatattcttccttcactgatacagaagggcgtgttgagtcgc
gaggatgatgagaatatcgaagccgaacatcgcaatcatggaatgctggctgcatcagcg
cttttactagatcgtatttaccgaaagaagtcaaattggtatgacatgtttctacagtct
cttgctgaaaacgacttcggtcacttggctgagaaaattgacccagacttcatgaagaag
tgggcgattcggaatgaagaagttatatatcagagaggagaaccacctgattcatcgaca
atggaaaactatcagtcagatgatggggaagccatgactgatctaaaaggtttgaatttg
tcaccaaatcaccaacgtgatcacacgcacgataccaatgacaccaaaaaagaagaaaac
cttaattctacggctaaggattccgctggtgaagaagcattgacaaaattgaaacaggtc
cagcagacagctagacaaccaacagagcatgacgagttatctggaacatgtgcagagtca
tctcctatggcaagcaatgatcagtcagaaccagtggcttccgtaccacccagtatcgcg
gtacaggattctagtgagaccattggatcagacctatcactatacagatatcaggaagag
ctggccaaacccggattagagggacataactctatagtcattgctccaactaacagtggc
aagacgcacgtggccatcaggatcatgcagcaccacctgaggagaggtcagggtaaggtg
atattcctggtgccgacctcggctttggcaacacaacagcgggataggtgtcacgaactg
ttaaaatgtccggtcaaggtgatgacgggggaaagccaagcaagagaaaaatatattgac
atgtcagttcacctgaaaaatcacgatgtgattgtggctacgccgcagatacttgttaac
tgtctgttggcaaaagaagatgttaccctgcaaacgttttctctcattgtgttcgatgag
tgtcacagaacgtacgaggatacaccttacaacgcagtgatgcgaatctactgggacgag
aagtttacaagtgcatatgttcgtcttccgcagattttgggaatgacagcttcactagga
tcaggtcaggctaactctcagtcatcggctaacacatgggtcaaaaacattatggccaac
atggactctcaaaaactggtgactgtaaaggaaaacatcaaggagctagaagaaaatatc
aataacacagatacggagattatagagacaaaagagcgacgtaacaagtcgtttggcaac
cttgtcaacgatatgatggcgaccatagaagggactataaaccgcttggagggcgagcta
aaacgacctcctacattgcggagtggcgctcagtacacgcaatggtgtagtacgctgaga
aaacaggtgacaagcttaagtaccgtggacaacgaccttcacaggagcctgaagatatat
gccgactacttagaggtgtaccatcgcgccctcctaatataccaggatgcacgtgtcagt
gacgcagtccggtatctcaaggaggagttagatgagatgtatttcgaggagacggctgta
gaggctgatcgtgagatgtatggtctgtttcaagagaagcagcagctgatggaaaaccat
gatgacggtgatcaggagaaccccaagctgcacgaagtccaggttcggatttgtacttta
tttcgtgacgaccctgattctagagccatcatatatgttaaaacgatagagcttgccaga
tcgatggaggcctggatgaatgagtgcccggagcttcaatctctaaaagcggtgcgcttt
gtaggtgcacatgctaaggttggaatcggaggtataaccaagatggaacaagatacaatc
ttgaaggcgttccggaatggcgatcacaaggttgttattggtacctctgtgttagaggag
ggattggacgtgcctagatgtaatctggtcatcctttacgatcacgttaccaacgaaata
cagcgtgttcagacgagaggacgcataaggagagacaatagccacttcgttctcatagta
tctgaatcagggcaagcagcacagaaagaacttgtaaacgagcgaagagaggacatgagt
tcggaagccatacgtttagtccaggacgagatttctagagacccgcaggccttctacgaa
aagcagcaggaccagcagcgagaagagaagcggaaacgagacgcggttgttttagatgaa
caaaagcaactggagaacaaccctgtgtacgaggtgaaatgtaaccactgcagaggtttg
ttgtttttgtcgtcagatcttcgcaagattaaggttcatcacaccgtcgtggccagaggc
atgaaggacaccctgagtcctggtccgcgtggaaaaccgtcatttgtagatagggacatg
gagcatggcattgcagaactttattgtaagacgtgtcagatattcattgggtctgttaac
aagtccatgtcactgttcttccccatgcctcgaatcgatcagatcacattttcaagagat
gatgtctacaaaacatgcaagaaatggaaagatgtcaaaaaactctttggtattaaaaca
ttttgtcctattgaggatatgcggtttattttagcacttcctgctgaggaaagagacttc
tatacctcataa
DBGET
integrated database retrieval system
