Mycoplasma sp. SG1: JRW51_01580
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Entry
JRW51_01580 CDS
T11091
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
myp Mycoplasma sp. SG1
Pathway
myp03030
DNA replication
myp03410
Base excision repair
myp03420
Nucleotide excision repair
myp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JRW51_01580 (ligA)
03410 Base excision repair
JRW51_01580 (ligA)
03420 Nucleotide excision repair
JRW51_01580 (ligA)
03430 Mismatch repair
JRW51_01580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myp03032
]
JRW51_01580 (ligA)
03400 DNA repair and recombination proteins [BR:
myp03400
]
JRW51_01580 (ligA)
Enzymes [BR:
myp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JRW51_01580 (ligA)
DNA replication proteins [BR:
myp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JRW51_01580 (ligA)
DNA repair and recombination proteins [BR:
myp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JRW51_01580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JRW51_01580 (ligA)
MMR (mismatch excision repair)
DNA ligase
JRW51_01580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JRW51_01580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
UPF0758_N
DUF7501
Motif
Other DBs
NCBI-ProteinID:
URM53017
LinkDB
All DBs
Position
313869..315920
Genome browser
AA seq
683 aa
AA seq
DB search
MEKDNNKINLEIENLIKEINQAREDYWVKSKPKITDQEYDILFDRLKLLEQKYPQFKSPN
SPTIKVGYEPTASNLIKAKHLTQMLSLSNAYNRDDILNFKKSILKKISSDSSCHFFLELK
LDGLSIDLIYEDYQLQKAITRGDGLIGEDVTDRILTIENLPKKIKYKSLNVTGEVILSNS
TFKEINKEIEIKNEALIKDNKKPLSLFLSPRNLTSGTVKHKSLELVKARKLNIFLYNVVN
WKDFNLKTQQETLHFLKRNHFPVFEGGQLIETDQDMFDYFDKWEKEAKDLDFNVDGVVIK
LNNLLDRGELGATINWPRWAIAYKFKAESIISELLDVEYGIGRSGKITFVAKIKPTYLDN
SLISRVHLYNYKFIKDNQIKIHDNLEVIKSASVIPKIIKVHHIDKDTKEIEEPKICPFCS
SQLVKYQDLVDIYCLNINCPGIVIHSLIHFCSQEGMNITGLGTKTIVKLYKLGIIKSIID
IYKLETIDKEIFFNDKDLNFKLKRYNNLIIEIRHSQKRPFQNLLFSLGIRFLGKGSIKLL
IDHFSNIDNLINAEIEDFLKIKGIGKTTAFSVVQFFKNESNLNLIQFFKDNNFNLSDNLN
QKKEVSIFTNKSVLLTGKFPHGKKAIYQYLQSCNANIVYNINNKLDYLIVGESPGKKLEI
AKTLPNVNILTFSQYLELINNAT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagataataacaaaataaatcttgaaattgaaaacttaattaaagaaattaat
caagcacgagaagattattgagttaaatcaaaaccaaaaatcactgatcaagaatacgat
attttatttgatagattaaagttacttgaacaaaaatatccgcaatttaagtctcctaat
tcaccaacgattaaagtaggatatgaaccaacagcatcaaacttaattaaagcaaagcat
ttaacgcaaatgttatctttaagcaacgcctataaccgcgatgatattttaaactttaag
aaatcaattttaaaaaagatatcttctgactcttcatgtcatttttttcttgaattaaaa
cttgatggactaagcattgatttaatttatgaagattatcaacttcaaaaagcgataaca
cgtggtgatggtttaattggagaagatgttacagatcgaattttaacaattgaaaacctg
ccaaagaaaattaaatataaatctttaaatgtaaccggagaagtgatattatctaattca
acttttaaagaaataaataaagaaattgaaattaaaaacgaagcattaattaaagacaat
aaaaaaccactttctttatttttaagtccgagaaatttaacttcaggcactgttaaacat
aaatcattagagcttgttaaagcaagaaaattaaatatctttttatacaatgttgttaat
tgaaaagatttcaatttaaaaacacaacaagaaacgcttcattttttgaaaagaaatcat
ttccctgtttttgaaggcggtcaattaattgaaacagatcaagatatgtttgattacttt
gacaaatgagaaaaagaagcgaaagatttagattttaatgttgatggtgttgttattaaa
ttaaataatcttttagataggggagaactaggagcaacaattaattgaccacgatgagcg
attgcttataaatttaaagcagaatcgattattagtgaacttttagatgttgaatacggt
atcggaagaagtggtaaaattacttttgtcgctaaaattaaaccaacctatttagataat
tctttaatttctagggttcatttatataactataagttcataaaagataaccaaatcaaa
attcatgataatcttgaagtcattaaatctgcttctgttattcctaaaattatcaaggtt
catcatatcgataaagatacaaaagaaatagaagaacctaaaatttgtcctttttgttca
tcacaattagttaaatatcaagacttagttgatatttattgtcttaatattaactgtcct
ggtattgttattcattctttaattcatttttgttcccaagaagggatgaatattacagga
cttggaacaaaaacgattgttaaactgtataaactgggtattatcaaatcaattattgat
atttataaattggaaacgattgataaagaaatctttttcaatgacaaagatttaaatttt
aaacttaaaagatataacaatttaataatagaaatcagacattctcaaaaaagaccgttt
caaaacttacttttcagtcttggtattagatttttaggaaaaggttcaatcaaattacta
attgatcatttttctaacattgataacttaattaacgctgaaattgaagattttttaaaa
attaaagggattggcaaaacaaccgctttttcagttgttcaatttttcaaaaatgaaagc
aaccttaaccttatccaattttttaaagataataatttcaatctatcagataatttaaat
caaaagaaagaagtttcaatctttactaataaaagcgttttgttaactgggaaattcccg
cacggaaaaaaagctatttatcaatacttacaaagttgtaatgctaatattgtttataat
ataaataataaacttgattacttaattgttggagaatcacctggtaaaaaattagaaatt
gctaaaactttaccaaatgtcaatattttaactttcagccaatatttagaattaataaac
aatgctacttaa
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