Mycolicibacterium sp. TUM20985: TUM20985_37690
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Entry
TUM20985_37690 CDS
T11065
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
myq Mycolicibacterium sp. TUM20985
Pathway
myq03030
DNA replication
myq03410
Base excision repair
myq03420
Nucleotide excision repair
myq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM20985_37690 (ligA)
03410 Base excision repair
TUM20985_37690 (ligA)
03420 Nucleotide excision repair
TUM20985_37690 (ligA)
03430 Mismatch repair
TUM20985_37690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myq03032
]
TUM20985_37690 (ligA)
03400 DNA repair and recombination proteins [BR:
myq03400
]
TUM20985_37690 (ligA)
Enzymes [BR:
myq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TUM20985_37690 (ligA)
DNA replication proteins [BR:
myq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM20985_37690 (ligA)
DNA repair and recombination proteins [BR:
myq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TUM20985_37690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM20985_37690 (ligA)
MMR (mismatch excision repair)
DNA ligase
TUM20985_37690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM20985_37690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
BDX33222
LinkDB
All DBs
Position
complement(3858457..3860514)
Genome browser
AA seq
685 aa
AA seq
DB search
MSSPDADVRREWQQLADEVRSHQFRYYVKDAPIVSDGEFDRLLGELTALEERYPELRTPD
SPTQLVGGAGFATDFSSADHLERMLSLDNVFNPEELIAWATRLTGEVGADPEFLCELKID
GVALALVYRDGVLTRAATRGDGRTGEDVTLNARTIDGIPERLTHHDDYPVPSVLEVRGEV
FFRLADFEDLNAGLVAEGKAPFANPRNSAAGSLRQKNPAVTARRNLHMICHGLGRTEGFT
PVTLHDAYLALKAWGLPVSDHTTRVTGIHAVAERVVYWGEHRHDVEHEIDGVVVKVDDVA
LQRRLGATSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKIAGSTVGL
ATLHNASEVTRKGVLIGDTVVIRKAGDVIPEVLGPVVEVRDGTERAFQMPTTCPECGTTL
APAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLQAGVITDEGDL
FTLAADDLLRTDLFTTQKGEISANGKRLLGNLGKAKQQPLWRVLVALSIRHVGPTAARAL
ASEFGSLDAIEAATEEQLAASEGVGPTIAAAVIDWFTVDWHRAIVDKWRAAGVRMHDERD
ASIPRTLEGLSIVVTGSLAGFSRDEAKEAILVRGGKAAGSVSKKTAYVVAGDAPGTKYDK
AIELGVPILDEEGFRRLLADGPDHG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcacctgacgccgacgtccgtcgcgagtggcagcagctggccgacgaggtccgg
agccaccagttccggtactacgtcaaggacgcaccgatcgtctccgacggggagttcgac
cggctgctcggtgagctgacggcgctggaggagcgctaccccgagctccgcacccccgac
tcacccacgcagctggtcggcggggccggcttcgccaccgacttcagctcggccgaccac
ctcgagcgaatgttgagtctcgacaacgtcttcaaccccgaggagctcatcgcgtgggcc
acccggctgaccggagaggtcggcgccgatccagagttcctgtgcgagctgaagatcgac
ggcgtcgcgctggcactggtgtaccgcgacggcgtcctgacccgagccgccacccgcggt
gacggacgcaccggtgaggacgtgaccttgaacgcccggaccatcgacggcatccccgaa
cgcctgacgcaccacgacgactaccccgtgccgagtgtgctggaggtgcgcggtgaggtc
ttcttccggctcgccgacttcgaggatctcaacgcgggtctcgtcgcagagggcaaggcg
cccttcgccaatccccgcaacagcgcggcgggttcgctgcgacagaagaatccggcggtc
accgcccgacgcaacctccacatgatctgccacggcctcggccgcaccgagggcttcacg
cccgtcaccctccacgacgcctacctcgcactcaaggcgtggggcctgccggtgtccgac
cacaccacccgcgtcacgggcatccacgccgtggccgagcgcgtcgtctactggggtgag
catcgccacgacgtcgaacacgaaatcgatggtgtcgtcgtcaaggtggacgacgtggcg
ctgcaacgccgactgggcgccacgtcgcgcgcgccgcggtgggcgatcgcctacaagtat
ccgcccgaggaagccaccacgaagctgctcgacatccgggtcaacgtcggccgcaccggt
cgcgtcacaccgttcgcctacatggaaccggtgaagatcgccgggtccacggtcgggctc
gcgacgctgcacaacgcctccgaggtcacccgcaagggcgtgctcatcggcgacaccgtc
gtcatccgcaaggccggtgacgtcatccccgaggtgctcggaccggtcgtcgaagtgcgc
gacggcaccgagcgtgcgttccagatgccgacgacctgccccgaatgcggcaccacgctg
gcccccgccaaggagggcgatgcggacatccgctgtccgaactcgcgcacgtgtccagcc
cagttgcgcgagcgcgtcttccacgtcgcgggtcgtggcgccttcgacatcgagggactg
ggttatgaggccgccatcgcgcttttgcaggcgggggtgatcaccgacgaaggtgacctc
ttcacgctggccgccgacgacctgctgcgcaccgatctgttcaccacgcagaagggcgag
atctcggccaacggcaagcgcctgctcggaaatctcggcaaggccaagcagcagccgttg
tggcgggtgttggtggcgttgtccatccggcacgtcgggccgaccgccgcccgggccctg
gccagtgagttcggcagtctggacgcgatcgaggcggcgaccgaggagcagctcgccgcc
agcgagggagtcggccccaccatcgccgccgcggtcatcgattggttcaccgtcgactgg
caccgcgccatcgtcgacaagtggcgtgcggcgggtgtgcggatgcacgacgaacgcgac
gccagcatcccgcggacgctggagggtctgtccatcgtcgtgacgggatcgcttgccggg
ttctcccgcgacgaggccaaggaggccatcctcgtgcgaggcggcaaggctgctggttcc
gtgtcgaagaagaccgcctacgtcgtcgccggcgacgcgccaggaaccaagtacgacaag
gcaatcgagctcggcgtgccgatcctggacgaggagggtttccggcggctgctggcggac
gggccggatcacggctga
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