Myroides sp. A21: MYRA21_0417
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Entry
MYRA21_0417 CDS
T03521
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
myr
Myroides sp. A21
Pathway
myr03030
DNA replication
myr03410
Base excision repair
myr03420
Nucleotide excision repair
myr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYRA21_0417 (ligA)
03410 Base excision repair
MYRA21_0417 (ligA)
03420 Nucleotide excision repair
MYRA21_0417 (ligA)
03430 Mismatch repair
MYRA21_0417 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myr03032
]
MYRA21_0417 (ligA)
03400 DNA repair and recombination proteins [BR:
myr03400
]
MYRA21_0417 (ligA)
Enzymes [BR:
myr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MYRA21_0417 (ligA)
DNA replication proteins [BR:
myr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MYRA21_0417 (ligA)
DNA repair and recombination proteins [BR:
myr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MYRA21_0417 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYRA21_0417 (ligA)
MMR (mismatch excision repair)
DNA ligase
MYRA21_0417 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MYRA21_0417 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AJA67627
LinkDB
All DBs
Position
complement(438809..440806)
Genome browser
AA seq
665 aa
AA seq
DB search
MDIKAQLDLLRKELNEHNYNYYVLDNPTISDFDFDQKLKELEKLELAHPEYFDINSPTQR
VGGTVTKNFDTIVHRYRMYSLDNSYSKEDLLDWEQRVQKVLGDVPVEFTCELKYDGASIT
ITYEDGVLVRAVTRGDGVQGDDVTNNIRTIRSVPIRLNGDYPQSFDIRGEIVLPLAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYNIVGSDLGVTTQYESLDK
ARAWGFKVPTISKLAKNIDEVLEFINYWDIHRHELPYETDGVVVKVNSLHYQDELGYTSK
APRWAIAYKFKAEQAETVLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDIRVNDSVYVEKGGEIIPKIVGVNLEARPADSERTVYIKECPECGTKLKRSVGEAQHY
CSNVYGCPPQIAGRIQHFISRKAMDIEGLGEETVVLLYKNELVENYADLYELKKEDVLGL
ERMGEKSADNLIKGIEASKQVPFERVLYALGIRYVGETVAKKLANHYKTIDALAEAPLME
LITVDEIGERIAQSVIDFFSSDINKEIIARLKGYGVQFVLEEKESTVVSDVLLGQTLVVS
GVFEQMSRDEIKQAIEDHGGKVGSSITSKTNYVVAGDKMGPSKLEKANKLGIKILTEAEF
IALIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagcacaattagatttacttcgcaaagaattaaatgaacataattataat
tattatgtgttggataatccaacgatttcagatttcgattttgatcagaaattaaaagaa
ttagagaagttagaattagctcacccagaatattttgatataaattctccaacacaaaga
gtaggaggtacggtgactaagaactttgatactatagtacaccgttatagaatgtattct
ttagataactcttattctaaggaagatttattagactgggaacaacgtgtacagaaagta
ttaggtgatgtgccagtagagtttacatgtgaattaaagtatgatggtgcatctattacg
attacgtatgaagatggagtgctggtaagagcagtgacacgaggtgatggagtgcaaggg
gatgatgtgactaataatattagaacaattagatcagttcctattcgattaaacggagat
tatcctcagagttttgatattcgtggagagattgtattgccattggcagggtttgaaaag
atgaatcaagatttgatagaaatcggagagacgccttattctaatccaagaaatacagct
tctggtagtttgaaattacaagatagtgccgaggttgcaaaacgtcctttagattgtcta
ctttataatatagtaggaagtgatctaggggtaacaacacaatatgaaagtttagacaaa
gctagagcatggggatttaaagttcctactatctctaagttagctaagaatattgatgaa
gtattagagtttataaattattgggatattcatagacatgagctaccttatgagacagat
ggagtggtggttaaggtcaattcattgcattatcaagatgaattagggtatacttctaaa
gcaccgagatgggctatagcatataaatttaaagctgaacaagcagagactgtattaaac
tctatatcatatcaagtaggtagaacaggtgctataactcctgtagcaaacttggaacct
gtacagttggcaggaacgatagtaaaacgtgcttctttacacaatgcagatcagatagcg
aagttagatattcgtgtaaatgactctgtatatgtggaaaaaggaggagagattatcccg
aaaatagtaggtgtgaatttagaggctagaccagctgactctgaacgtacagtatacatt
aaggaatgccctgaatgtggtactaagttaaagagaagtgtcggggaggcacaacactat
tgttcaaatgtgtatggatgtccacctcaaatagcgggtaggatacagcactttatctct
cgtaaggcgatggatatagaggggctgggagaagaaactgtagtactgttgtacaaaaat
gaattagtagagaattacgctgacttatacgagttaaagaaagaagatgttctaggttta
gaacgcatgggagagaagtctgcagataatctgataaaaggtatagaagcttctaaacag
gttccttttgaacgtgtattatacgcattagggatccgttatgtaggagagactgtggct
aaaaagttagcaaatcattataagacaatagatgctctggcagaagctccgttaatggag
ttgataacagtagatgaaattggagaaagaatagcacaaagtgtaatagacttctttagt
agtgatattaataaagaaataattgctagactaaagggatatggtgtgcaatttgtgtta
gaagaaaaggaatctacggtagtgtcagatgttcttctaggacagacattagtggtatct
ggggtgtttgaacaaatgtctcgcgatgagattaaacaagctatcgaagatcatggagga
aaagtaggaagttctattacctctaagactaattatgtcgtggcaggagataaaatggga
ccatctaagctagaaaaagcaaataaactaggtattaaaatattaacagaagcggagttt
attgcgttaattcaataa
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