Maylandia zebra (zebra mbuna): 101472122
Help
Entry
101472122 CDS
T02814
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04115
p53 signaling pathway
mze04145
Phagosome
mze04148
Efferocytosis
mze04350
TGF-beta signaling pathway
mze04510
Focal adhesion
mze04512
ECM-receptor interaction
mze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
101472122
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101472122
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
101472122
04148 Efferocytosis
101472122
09143 Cell growth and death
04115 p53 signaling pathway
101472122
09144 Cellular community - eukaryotes
04510 Focal adhesion
101472122
09142 Cell motility
04820 Cytoskeleton in muscle cells
101472122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mze04131
]
101472122
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101472122
Membrane trafficking [BR:
mze04131
]
Endocytosis
Phagocytosis
Opsonins
101472122
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101472122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
101472122
NCBI-ProteinID:
XP_024661031
LinkDB
All DBs
Position
LG15:complement(15966332..15978506)
Genome browser
AA seq
1175 aa
AA seq
DB search
MKLPGIFLLLMLWTCEAARVAESRDDNSVYDLFELVKVPSKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPENSFRDLIDSIHAERGFLLLLNFKQFRRTRGSLLTVEKKDGSGPVFEVVS
NGKANTLDIVFSTENKQQVVSIEDVGLATGQWKNITLFVQEDWAKLYVGCDEVNTAELDA
PIQSILTQETPASAQLRVGKGAVKDKFTGVLQNVRFVFGTTLEAILRNKGCQSAMTDTMV
LRNLNGSSAIRTEYSGHKTKDLQMVCGFSCEDLLSMFKELKGLGVVVKELSTELRKLTDE
NKLIKSHIGIHSGVCIHNGIVRKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANATV
PDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRD
CYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCVGEGRQTE
TCTKSPCPQXVSSYYINGNWGPWSPWDSCSLTCGGGQQTRKRLCNNPAPQYGGKECVGEA
KDIQRCNKTPCPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEV
PDACFEFNGVHRCENTVPGYNCLPCPTRYSGPQPFGHGVEQAAANKQVCSPRNPCLDGSH
DCNKNARCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKK
DNCPNLPNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDGCD
NCPYNSNPDQTDTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDN
CPLEHNPDQLDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACD
HDDDNDGIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISET
DFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFIN
TDRDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHKPTKAQGYSGLSIKVVNSTTGPGEH
LRNALWHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADS
GSIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccggggatatttttgttattgatgctttggacctgcgaggctgcgagagtc
gcagagagtcgagacgacaatagcgtgtatgacttgtttgagctcgtcaaagtccccagc
aagaaccacggggtgaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtccccgagaactcgtttagggacctgatcgattcc
atccatgccgagcggggtttcctcctactgctcaactttaagcagttcagacgcaccagg
ggaagcctcctgactgtggagaagaaggatggatccggacccgtgtttgaggtcgtctca
aacggcaaagcgaacaccttggacattgttttctccaccgagaacaagcagcaggtggtt
tccatcgaagatgtgggtctggctacgggtcagtggaaaaatatcacgctgttcgtgcag
gaggactgggcaaagctgtacgtgggatgcgatgaggtgaacaccgccgaactggatgcg
ccaattcagagcatcctgacgcaggagactccggccagcgcgcagctcagggttggcaag
ggagccgtgaaggacaagttcacgggggtcctacaaaacgtgcggtttgtgtttggaacg
actctggaagctattctgcgcaacaaaggatgccaaagcgccatgactgacaccatggtc
ctgaggaacctcaatggctcctcggccatcagaactgagtacagtggccataagactaaa
gacctgcagatggtgtgtggcttctcctgtgaggacctgctcagtatgtttaaagagctg
aagggtcttggtgtggtggtcaaggagctgtccactgaactccgcaagctgacggatgaa
aacaagcttattaaatcccacattggaattcacagtggtgtctgtatccacaatggcatc
gttcgcaagaacagagacgagtggaccgtggatgactgcaccgagtgcacttgtcagaac
tctgctactgtgtgtcgcaagatctcctgccccctgatcccctgtgctaatgctactgtt
cccgatggagagtgctgcccacgctgtggaacaccgagcgactatgcagaggacggctgg
tcgccgtggtctgaatggacccattgttccgtgtcatgtgggcgtggcatccagcagcgt
gggcgctcttgcgaccgtatcaataacaactgtgagggcacctctgtgcaaacccgagac
tgttacctccaggagtgtgacaagcgcttcaagcaggacggcagctggagccactggtca
ccatggtcatcatgctcggtcacctgtggtgctggtgtcatcacccgaatccgcctctgc
aactccccaactcctcagctaggaggcaaggactgtgttggagaaggccggcaaactgaa
acgtgtacaaagtccccgtgtccccagtaagtttcttcatactacatcaatggcaactgg
ggtccctggtctccctgggattcatgcagtctcacctgcggaggtggtcaacagactcgg
aaacgcctgtgcaataatcctgcaccacagtacggcggtaaagagtgcgtcggtgaagcc
aaggacatccagaggtgcaacaagaccccctgcccaatcgatggatgtctgtccaaccct
tgctttgctggtgccaagtgcacaagttttcccgatggttcctggaagtgtgggaagtgc
ccagcaggatacactggcaatgggatcaagtgtaaagatattgatgagtgcaaagaggtt
cctgatgcgtgctttgagtttaatggggtgcaccgctgcgagaacaccgttccaggctac
aactgtttgccctgcccaactcgttactcaggaccccagccgtttggccatggtgtggag
caggccgccgctaataagcaggtgtgctcaccccgtaatccctgcctcgatggaagccat
gactgtaacaaaaatgcccgctgtaactatcttggacactttgctgaccccatgtttcga
tgtgagtgcaaacctggttatgctggcaatggccatatctgcggagaggacacagatctg
gatgggtggcccaattcagatttggtgtgtgttgaaaacgccacctaccactgcaaaaaa
gacaactgtcccaacctcccgaactcagggcaagaagattatgataaggatggcattgga
gatgcttgtgacaatgatgatgacaatgatggtattcctgatgatagggacaactgtcct
tttgtgtacaatcccaggcagtatgactatgaccgtgatgatgtgggtgacggctgcgac
aactgcccctacaatagcaacccagaccagacagacaccgacagcaacggagagggagat
gcctgcgcagtggacattgatggagatggcatactgaatgagaaggacaactgtccctat
gtgtacaatgttgaccagagagacacagatctggatggagtgggagacatgtgtgataac
tgcccactagaacataatcctgatcagttggattcagatgatgaccgcgtgggagacaag
tgcgacagcaaccaggacattgatgaggatggacaccagaacaacctggataactgcccg
tatattcccaacgccaatcaggctgaccatgacaaggacggcaaaggtgacgcctgtgac
catgatgacgacaatgatggcatccctgatgaaaaagacaactgcaggctggcgttcaat
cctgatcagctggactctgatggtgatggccgtggagatgcttgcaaagatgactttgat
caggacaatgtgcctgacatctatgacgtgtgtcccgagaactttgacatcagtgagaca
gacttccgcaagttccagatggttcctttggatccaaaaggcacctcccagattgatcct
aactgggtcgtccgccaccagggcaaagagctggttcaaactgttaactgtgaccctggc
attgctgttggctaccatgagttcaatgcagtggacttcagtgggactttcttcatcaac
actgacagggatgatgactatgccggctttgtgtttggctaccagtccagttccaggttc
tatgtggtgatgtggaagcaaatcacacagacctactggtcacataagccaactaaggca
caaggttactctggcctgtccatcaaagtggttaattccaccaccggcccaggagagcac
ctcagaaatgccctctggcacacaggcaacaccccaggacaggttcgcactctctggcat
gacccaaagaacgttggatggaaagacttcactgcctacagatggcatctgatccatagg
ccgagaacaggacacattcgagttgtcatgtatgagggtaagaagatcatggctgattct
ggtagcatctatgacaagacgtatgcaggtggaaggctaggtctttttgtcttttcacaa
gagatggtatacttctcagacctcaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
