Nocardiopsis akebiae: KGD83_25035
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Entry
KGD83_25035 CDS
T08903
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake03030
DNA replication
nake03410
Base excision repair
nake03420
Nucleotide excision repair
nake03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGD83_25035 (ligA)
03410 Base excision repair
KGD83_25035 (ligA)
03420 Nucleotide excision repair
KGD83_25035 (ligA)
03430 Mismatch repair
KGD83_25035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nake03032
]
KGD83_25035 (ligA)
03400 DNA repair and recombination proteins [BR:
nake03400
]
KGD83_25035 (ligA)
Enzymes [BR:
nake01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KGD83_25035 (ligA)
DNA replication proteins [BR:
nake03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KGD83_25035 (ligA)
DNA repair and recombination proteins [BR:
nake03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KGD83_25035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGD83_25035 (ligA)
MMR (mismatch excision repair)
DNA ligase
KGD83_25035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGD83_25035 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_3
HHH_8
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
QUX28460
UniProt:
A0ABX8C238
LinkDB
All DBs
Position
complement(5869781..5872021)
Genome browser
AA seq
746 aa
AA seq
DB search
MSAPDTTTDIPDEVRARHTELCQELDDHSYRYYLGTPVVSDAEYDTLMRELVGIEDSYPA
LVTQDSPTQKVGAPISVDFAAVEHLVRMESLGNAFDVDELNAWADRASAEVPVTGYLCEL
KIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVRG
EVFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYS
PAKDGGGDVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVGYYAAHRHEPAYEID
GIVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVMEP
VVVAGSEVEFATLHNAREVERKGVRIGDTVVLRKAGDVIPEIVAPVLDRRDGTERAFAMP
ESCPECGTTLGQQKEGDVDLRCPNARSCPGQLRERLFFVASRKALDIEALGYVAATALTQ
PLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPKTGEPKVVSFFANKKGEP
KKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHFRSMDAIRAASEEELASV
DGVGPTIAASIREWFAVDWHAEIVRKWAEAGVRMEDEDDGSRPRHLEGVTVVVTGSLEGF
SRDGAKEAIAERGGRATASVSKKTGFVVVGDSPGSKYDKAVKLGVPVLDEEGFRVLLEAG
PEAAEAMRVNTEPEEAGAGEAVTDGA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcccgacaccaccaccgacatccccgacgaggttcgcgcccggcacaccgag
ctgtgccaggaactggacgaccacagttaccggtactacctgggcacaccggtggtctcc
gacgccgagtacgacaccctcatgcgtgagctggtcggcatcgaggactcctaccccgcc
ctggtcacccaggactcgcccacgcagaaggtcggcgcgcccatcagcgtcgacttcgcc
gcggtcgagcacctggtgcggatggagagcctgggcaacgccttcgacgtcgacgagctc
aacgcctgggccgaccgggccagcgccgaggtgcccgtcaccggctacctgtgcgagctc
aagatcgacggcctggccgtggacctggtgtacgagaagggccgcctcgtgcgcgccgcc
acccgcggcgacgggcgcgtcggcgaggacatcaccctcaacgtgcgcaccatcggggtc
gtacccgaacgcctggacgagagcgtgcgccccgcacccgagctgctggaggtgcgcgga
gaggtcttcctgccggtggaggacttcggaaagctcaacgagcgcatcaccgcctcgggc
gagcacacccccttcgccaacccccgcaacgccgccgccgggtcgctgcgccagaaggac
ccccgcgtcaccgccacccggccgctgtcgatgatcgtgcacggcgtgggcgcctactcc
ccggcgaaggacggcggcggggacgtggccttcaccagccagtcgcaggcctaccggctg
ctgggggagtgggggctgccgctcagcgaccgctaccgggtcgtcaccaccatggacgag
gtccgcgagtacgtggggtactacgcggcccaccgccacgagcccgcctacgagatcgac
ggcatcgtcatcaaggtcgacgacttcgccctccagcggcgcctgggctccaccagccgc
gtcccgcgctgggcgatcgcctacaagtacccgcccgaggaggtcaccacccgcctgctc
gacatcaaggtgggcgtgggccgcaccgggcgcgtgaccccctacggggtcatggagccg
gtggtcgtggccgggtccgaggtcgagttcgccaccctgcacaacgcgcgcgaggtcgag
cgcaagggcgtgcgcatcggcgacaccgtcgtgctgcgcaaggcgggcgacgtcatcccc
gagatcgtcgccccggtgctcgaccgccgagacggcaccgagcgggccttcgccatgccc
gagtcctgccccgagtgcggtaccaccctcggccagcagaaggagggcgacgtcgacctg
cgctgccccaacgcccgctcctgcccgggccagctgcgcgagcgcctgttcttcgtggcc
agccgcaaggccctggacatcgaggcgctgggctacgtggccgccaccgccctcacccag
ccgctggagcccgcccggccgcccgtgcgcgacgagggcgacctgttcgacctcaccgtc
gacatgctgctgccgatccgcacccacgtgctcgaccccgacaccaccgaacccaagacc
gaccccaagaccggcgagcccaaggtggtgtccttcttcgccaacaagaagggcgagccc
aagaagacggtcgagaagctcttcgagcagttggaggaggccaagtccaagccgttgtgg
cgtgtgctggtggcgctgtccatccggcacgtgggtccgcgcgcggcggaggacctggcc
cgacacttccgctccatggacgccatccgcgcggccagtgaggaggagctggcgtcggtc
gacggcgtcggcccgaccatcgccgcctccatccgcgagtggttcgcggtggactggcac
gccgagatcgtccgcaagtgggccgaggccggggtgcgcatggaggacgaggacgacggc
tccaggccgcgccacctggagggggtcaccgtggtggtgaccggttccctggagggcttc
agccgggacggggccaaggaggcgatcgccgagcgcggcggccgggccacggcgtcggtg
tccaagaagaccggtttcgtggtggtcggcgacagccccggctccaagtacgacaaggcc
gtcaagctgggggtgccggtcctggacgaggagggcttccgcgtactgctggaggccggt
cccgaagcggccgaggccatgcgcgtcaacaccgagcccgaggaggccggcgccggggag
gccgtcacggacggggcctga
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