Candidatus Nitrospira allomarina: PP769_14410
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Entry
PP769_14410 CDS
T09427
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nall
Candidatus Nitrospira allomarina
Pathway
nall03030
DNA replication
nall03410
Base excision repair
nall03420
Nucleotide excision repair
nall03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PP769_14410 (ligA)
03410 Base excision repair
PP769_14410 (ligA)
03420 Nucleotide excision repair
PP769_14410 (ligA)
03430 Mismatch repair
PP769_14410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nall03032
]
PP769_14410 (ligA)
03400 DNA repair and recombination proteins [BR:
nall03400
]
PP769_14410 (ligA)
Enzymes [BR:
nall01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PP769_14410 (ligA)
DNA replication proteins [BR:
nall03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PP769_14410 (ligA)
DNA repair and recombination proteins [BR:
nall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PP769_14410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP769_14410 (ligA)
MMR (mismatch excision repair)
DNA ligase
PP769_14410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PP769_14410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WNM57160
UniProt:
A0AA96GBM3
LinkDB
All DBs
Position
3236246..3238363
Genome browser
AA seq
705 aa
AA seq
DB search
MQPNLFENNPDEAKVEDSSKAPQSRAVPSAKVQLKLEKLKHAIRRHDELYYVRSRPEISD
AEYDQLFRELQSLESRYPDLRTPESPTQRVGGAPLAQFNKITHEFPLLSLDSEMDESRVL
AFDQRVSRELDGQQPSYSAEPKYDGLSVALTYDHGIFVRGATRGNGAIGEDVTHNLRTIR
ALPLQLKEGGTFPSHMVVRGEVFMKLQDFHTLNRRLTEQGEEPFANPRNASSGTLRQLDP
AITATRPLTITCYDFMNSGSIRPSTHYNAVTCLEAWGLPIPQFRRHCPSIQEALEFHREM
FERRDVLPFEIDGIVIKIDRFDWQKALGEKSRSPRWAIAFKFPARKELTKVQEIAMSVGR
TGALTPIALLDPVEIGGVTVSRASLHNVEEVARKDVRVGDTVKVERAGDVIPDVVERVPV
PGEKRGAPFQPPTTCPVCQSHTIQEGPILYCTGQTVCSAQLKGSLEHFASKGALNIEGLG
KKTVAQLVDKGFVKDLSDLYTLGIDDLLQLEGFADKSARQLLGEIERSKEVPFARLLIGL
GIRHVGTHIARILAQNFGSLDNLKKATEEELLQIRDIGPEIAASVTHFFQEPRNLKVWQC
MESLGVRIQQEASMPKPHAQPLRGKIFVLTGTLNGYSRQEATRKIEELGGRVTASVSKQT
DYLIAGEDPGSKYERATTLGVKILDENEFSIIIQSGNSLSSSSNQ
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaatttattcgagaataatcctgacgaggcaaaagtagaggattcttccaag
gctcctcaatctcgtgctgtgccatccgcaaaggttcaactgaagcttgaaaagttaaaa
cacgccattcgtcgacatgatgaattgtattatgtccgaagccgaccggaaatctctgat
gctgaatatgaccaactctttcgagaactgcaatccttagagagccgctacccggacctc
aggacacctgagtcgccaacccagcgggtcgggggtgcgccacttgcccaattcaataaa
attacacacgaatttcctcttcttagtttggactcggaaatggatgaatcgcgcgttttg
gcgttcgatcagcgggtttcccgggaattagacgggcaacaaccgagctattcggctgaa
cccaaatacgatggattatctgtggccctcacttacgaccatggcatatttgtacgagga
gctacgagaggaaatggggctataggggaggacgtgacgcacaatcttcgtaccattcgt
gccttgccattacaattgaaggaaggcgggacttttccctctcatatggtggtgcggggt
gaggtgtttatgaaactccaggattttcacacattgaatcgacgcttaaccgaacaaggg
gaagaaccctttgccaatccgcgcaatgcgtcatccggaacattgcgccaattggacccg
gctattaccgcgacccgcccgttgaccatcacctgctacgatttcatgaactcgggatca
attagacccagcacccattataatgcggtcacctgcttagaagcatggggattgccgatc
cctcaatttcgtcggcactgcccctccatccaggaagctctggaatttcatcgggaaatg
tttgaacgacgggacgtcctgccgttcgaaattgacggcatcgtcattaaaattgaccgg
ttcgattggcaaaaggctcttggcgaaaagtcacgcagtccccgatgggccattgccttc
aaatttcctgcaagaaaggaactgaccaaagttcaggagattgccatgtcggtcggtcgg
accggggcgctcactcccattgccctactggatccggtggaaatcggtggtgtgacggtg
agtcgggcctcactgcataacgtggaggaagtcgcccgtaaagatgtacgggtgggtgat
accgtaaaagtcgaacgggcaggggacgtcattccagatgtggtggaacgagtgcctgtg
ccgggtgaaaagcgtggggctccttttcagccgccaacgacctgtccggtgtgtcagtcc
catacgattcaggaagggccgattctgtattgtactggccaaacggtatgttccgcgcaa
ctcaaaggatcacttgaacattttgcgtcaaaaggcgccttgaatatcgaagggcttgga
aaaaaaacggtagcacaattggtcgacaagggcttcgtcaaggacttatcagatctttat
acattaggtattgacgaccttcttcaattagaaggctttgcagataaatccgcgaggcaa
cttttgggagaaatcgagagaagtaaggaggttcccttcgcgcgtcttctgattggcctc
ggcatacgtcatgtggggactcatatcgccagaattttggcccaaaattttggttcactc
gataatttgaagaaggctaccgaagaggaacttttacaaattcgtgacattggaccggag
attgctgcgagtgtgacccatttttttcaagaaccccgtaatttaaaggtttggcaatgt
atggagtcattgggagttcggattcaacaggaagcaagtatgccaaagccgcatgctcaa
ccgttgagggggaagatttttgtgttaaccgggacgttgaacggctattcccgtcaggag
gcgacacgcaaaattgaagagttaggtggacgtgtcactgccagcgtcagtaaacagaca
gattaccttatagccggtgaagaccccggctctaaatatgaaagggccaccacattagga
gttaaaattttagatgaaaatgaattctctataatcattcaatccgggaacagtctatct
tcatcatccaatcagtaa
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