Nautilia profundicola: NAMH_0606
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Entry
NAMH_0606 CDS
T00860
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nam
Nautilia profundicola
Pathway
nam03030
DNA replication
nam03410
Base excision repair
nam03420
Nucleotide excision repair
nam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NAMH_0606 (ligA)
03410 Base excision repair
NAMH_0606 (ligA)
03420 Nucleotide excision repair
NAMH_0606 (ligA)
03430 Mismatch repair
NAMH_0606 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nam03032
]
NAMH_0606 (ligA)
03400 DNA repair and recombination proteins [BR:
nam03400
]
NAMH_0606 (ligA)
Enzymes [BR:
nam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NAMH_0606 (ligA)
DNA replication proteins [BR:
nam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NAMH_0606 (ligA)
DNA repair and recombination proteins [BR:
nam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NAMH_0606 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NAMH_0606 (ligA)
MMR (mismatch excision repair)
DNA ligase
NAMH_0606 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NAMH_0606 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_5
HHH_2
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
ACM93636
UniProt:
B9L8R4
LinkDB
All DBs
Position
537602..539572
Genome browser
AA seq
656 aa
AA seq
DB search
MIKDYNDYKKAVDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKIDPTSPTQ
RVGDVVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILGHENFSFYIEPKFDGASL
NLIYENGKLIRAETRGDGEIGEDVTLNAKTINSIPLEIKEKSLIEIRGEVVIKKDDFDKL
NEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVGVNSLNYERYSELMDYI
YSLGFKEPPKRGVCKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDILGYTQKY
PRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLHNFDEIER
MDIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHCPVCGAEVLDEGALIKCQN
LSCPARVVNTIIYFASKNCLDIEGLGESVAKLLYEHGLVKDVTDLFELKVEDLEKLPLFA
RKKAENLVNAIKSKVGVECWRFVNALGIEHIGEVASKKICEKFGVEFYKHAPEEFEEIEG
FGPEMVKSIAEYIRVNKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSKPRSEI
KKMLEDMGAKVSSSVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKEGK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagattataatgattataaaaaagccgttgatactcttaaaaaatgggcatat
tattattatgtacttgataaccctttagttaccgatgaagaatatgacaaactctatcac
gaagtagaagaatatgaaaaaaaacatccggataaaatagaccctacatctcctacacaa
agggtaggtgatgttgttttagaaggttttgaaaaagcaaaacatttaagtcgtatgtgg
tcaatggaagacgtgtttaatgaaaaagattttttagactgggtaggaagagttaaaagg
attttaggacatgaaaatttcagtttttatatagaaccgaaatttgacggggcgagttta
aatcttatatacgaaaacggaaagcttataagggctgaaacaagaggtgacggagaaata
ggtgaagatgtaactttgaatgcaaaaaccataaactccattcctcttgaaataaaagaa
aagtcccttattgagataagaggagaggttgttataaaaaaagacgactttgataaacta
aatgaggaaagactaaaaaacggtgagccgacatttgctaatccacgcaatgcggcggcg
ggaagcctcagacaacttgatcctaaaataaccgcaaaaagacctctgatattttacccg
tggggagtcggggttaattctttaaattatgaaagatacagtgaacttatggattatatt
tattcattgggatttaaagaacctccaaaaagaggtgtatgtaaggatataccatgcgtg
gaaaaaaaatatgatgagtttgtgaaactgcgagacagttttgaagtaatgctcgatgga
atggtggtgaaaattgatgaaataaaatatcatgatattttaggttatactcaaaaatac
ccgcgctggatggttgcatataagttcccggcaattgaaaaagaaacaataatagaagat
gtgatagtgcaggtgggaagaacaggggttttgacacccgtagcagttcttaaacctgtg
gaaattggcggggtgattgttgaaagggcgacacttcataattttgatgaaatcgaaaga
atggatataagaatcggtgatcatgtgatagttataagaagcggtgatgtcatccctaaa
attacaaaagttttaacatggaaaagaaaaggtgatgaaaaaccgattccacgtcctaca
cattgtccagtatgcggggctgaggtgcttgatgaaggagcgcttattaagtgtcaaaat
ctttcatgtcctgcgagagtggtaaatacgattatatattttgcaagtaaaaactgtctt
gatatagaggggcttggtgaaagcgttgccaaacttttatatgaacacgggcttgtaaaa
gatgtgacggatctttttgaattgaaagttgaagatcttgaaaaactgcctctttttgca
agaaaaaaggcagaaaatctggtcaatgcgattaaaagcaaagtcggggttgaatgctgg
agatttgtaaacgccctcgggattgagcatataggtgaagttgcgagtaaaaagatatgc
gagaaattcggagtcgaattttacaaacacgctcccgaagagtttgaagaaatagaaggt
ttcgggcctgaaatggttaaatccattgccgaatacataagggtaaacaaggaaaaaata
gaaaaactgatagagattctaaaacctaaaaaccctgaaaaaaaagaggttcagaagact
ccttttacaggtaaaacggtggttcttactgggactatgagcaagccaagaagcgaaatc
aaaaaaatgcttgaagatatgggtgctaaagtttcaagcagtgtgagtaaaaaaaccgat
ttcgttatttacggagaagatgcgggaagcaaatacgataaagccaagaaattaggagtt
aatcttttaagcgaagatgatatgtggaagatgcttaaagaaggaaaataa
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