KEGG   Nautilia profundicola: NAMH_0606
Entry
NAMH_0606         CDS       T00860                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
nam  Nautilia profundicola
Pathway
nam03030  DNA replication
nam03410  Base excision repair
nam03420  Nucleotide excision repair
nam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NAMH_0606 (ligA)
   03410 Base excision repair
    NAMH_0606 (ligA)
   03420 Nucleotide excision repair
    NAMH_0606 (ligA)
   03430 Mismatch repair
    NAMH_0606 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nam03032]
    NAMH_0606 (ligA)
   03400 DNA repair and recombination proteins [BR:nam03400]
    NAMH_0606 (ligA)
Enzymes [BR:nam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NAMH_0606 (ligA)
DNA replication proteins [BR:nam03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NAMH_0606 (ligA)
DNA repair and recombination proteins [BR:nam03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NAMH_0606 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NAMH_0606 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NAMH_0606 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NAMH_0606 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT PTCB-BRCT HHH_5 HHH_2 DNA_ligase_ZBD Nlig-Ia BRCT_2 Oxidored_nitro
Other DBs
NCBI-ProteinID: ACM93636
UniProt: B9L8R4
LinkDB
Position
537602..539572
AA seq 656 aa
MIKDYNDYKKAVDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKIDPTSPTQ
RVGDVVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILGHENFSFYIEPKFDGASL
NLIYENGKLIRAETRGDGEIGEDVTLNAKTINSIPLEIKEKSLIEIRGEVVIKKDDFDKL
NEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVGVNSLNYERYSELMDYI
YSLGFKEPPKRGVCKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDILGYTQKY
PRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLHNFDEIER
MDIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHCPVCGAEVLDEGALIKCQN
LSCPARVVNTIIYFASKNCLDIEGLGESVAKLLYEHGLVKDVTDLFELKVEDLEKLPLFA
RKKAENLVNAIKSKVGVECWRFVNALGIEHIGEVASKKICEKFGVEFYKHAPEEFEEIEG
FGPEMVKSIAEYIRVNKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSKPRSEI
KKMLEDMGAKVSSSVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKEGK
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgataaaagattataatgattataaaaaagccgttgatactcttaaaaaatgggcatat
tattattatgtacttgataaccctttagttaccgatgaagaatatgacaaactctatcac
gaagtagaagaatatgaaaaaaaacatccggataaaatagaccctacatctcctacacaa
agggtaggtgatgttgttttagaaggttttgaaaaagcaaaacatttaagtcgtatgtgg
tcaatggaagacgtgtttaatgaaaaagattttttagactgggtaggaagagttaaaagg
attttaggacatgaaaatttcagtttttatatagaaccgaaatttgacggggcgagttta
aatcttatatacgaaaacggaaagcttataagggctgaaacaagaggtgacggagaaata
ggtgaagatgtaactttgaatgcaaaaaccataaactccattcctcttgaaataaaagaa
aagtcccttattgagataagaggagaggttgttataaaaaaagacgactttgataaacta
aatgaggaaagactaaaaaacggtgagccgacatttgctaatccacgcaatgcggcggcg
ggaagcctcagacaacttgatcctaaaataaccgcaaaaagacctctgatattttacccg
tggggagtcggggttaattctttaaattatgaaagatacagtgaacttatggattatatt
tattcattgggatttaaagaacctccaaaaagaggtgtatgtaaggatataccatgcgtg
gaaaaaaaatatgatgagtttgtgaaactgcgagacagttttgaagtaatgctcgatgga
atggtggtgaaaattgatgaaataaaatatcatgatattttaggttatactcaaaaatac
ccgcgctggatggttgcatataagttcccggcaattgaaaaagaaacaataatagaagat
gtgatagtgcaggtgggaagaacaggggttttgacacccgtagcagttcttaaacctgtg
gaaattggcggggtgattgttgaaagggcgacacttcataattttgatgaaatcgaaaga
atggatataagaatcggtgatcatgtgatagttataagaagcggtgatgtcatccctaaa
attacaaaagttttaacatggaaaagaaaaggtgatgaaaaaccgattccacgtcctaca
cattgtccagtatgcggggctgaggtgcttgatgaaggagcgcttattaagtgtcaaaat
ctttcatgtcctgcgagagtggtaaatacgattatatattttgcaagtaaaaactgtctt
gatatagaggggcttggtgaaagcgttgccaaacttttatatgaacacgggcttgtaaaa
gatgtgacggatctttttgaattgaaagttgaagatcttgaaaaactgcctctttttgca
agaaaaaaggcagaaaatctggtcaatgcgattaaaagcaaagtcggggttgaatgctgg
agatttgtaaacgccctcgggattgagcatataggtgaagttgcgagtaaaaagatatgc
gagaaattcggagtcgaattttacaaacacgctcccgaagagtttgaagaaatagaaggt
ttcgggcctgaaatggttaaatccattgccgaatacataagggtaaacaaggaaaaaata
gaaaaactgatagagattctaaaacctaaaaaccctgaaaaaaaagaggttcagaagact
ccttttacaggtaaaacggtggttcttactgggactatgagcaagccaagaagcgaaatc
aaaaaaatgcttgaagatatgggtgctaaagtttcaagcagtgtgagtaaaaaaaccgat
ttcgttatttacggagaagatgcgggaagcaaatacgataaagccaagaaattaggagtt
aatcttttaagcgaagatgatatgtggaagatgcttaaagaaggaaaataa

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