Neisseria animaloris: NCTC12227_00545
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Entry
NCTC12227_00545 CDS
T06907
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nani
Neisseria animaloris
Pathway
nani03030
DNA replication
nani03410
Base excision repair
nani03420
Nucleotide excision repair
nani03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12227_00545 (ligA_2)
03410 Base excision repair
NCTC12227_00545 (ligA_2)
03420 Nucleotide excision repair
NCTC12227_00545 (ligA_2)
03430 Mismatch repair
NCTC12227_00545 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nani03032
]
NCTC12227_00545 (ligA_2)
03400 DNA repair and recombination proteins [BR:
nani03400
]
NCTC12227_00545 (ligA_2)
Enzymes [BR:
nani01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12227_00545 (ligA_2)
DNA replication proteins [BR:
nani03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12227_00545 (ligA_2)
DNA repair and recombination proteins [BR:
nani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12227_00545 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12227_00545 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
NCTC12227_00545 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12227_00545 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
VEJ20830
UniProt:
A0A3S4Y7C9
LinkDB
All DBs
Position
1:complement(609982..612435)
Genome browser
AA seq
817 aa
AA seq
DB search
MNNTARRIQELTEQLNRYAYEYYTLDAPTVPDAEYDRLFRELEALEAAHPDLRLPESPTQ
RVGGMPLDGFESVRHTVPMLSLNNAFSPQDENDAFDHAEMLAFDERVRGGLSGVQPEYVI
EPKFDGLAISLLYRNGVLVQAATRGDGTTGEDVTQNIKTIANIPLKLRGDNLPSLLEVRG
EVLMLKADFAALNEKQAADNQKLFANPRNAAAGSLRQLDSRITAKRRLHFFAYGIAHIEG
GARLEEHIQELAYLSELGFSLPHGQFGVFPNIAEILAFYEHMSQKRPELPYEIDGMVVKV
NSLAQQETLGFVSRAPRWAIAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLQPVFVGGV
TVTNATLHNEGETQRKDVRVGDTVVVRRAGDVIPEVVRVVFERRPMQTIAETVSDGLQKD
LFAEPVRPSENVQNEQIPLYPQYRLPEHCPICASEIEREESEAVARCSGGMLCQAQRAQG
LIHFASRKAMDIDGLGQRQIEQLVAQNLVQHFADLYRLDVPTLQLMKENADKEQAADAGE
TVSDGLKTTAKKQSPTKWAENILAGIEASKQPELARFLFALGIRHVGERTAKSLAQAFGT
LENVRRAPEPVLACLPDIGTVVARSITHFFAQPEQQAMIDELLAVGVVPQNQTISLPLSQ
YVTPAKWLSRLPGFKISETKAAALWDLAGKNIDSLLNDNALNADWQQWRNQPENAALLLS
MRQFLEQMPSENKASVSDGLNQAVAGKTFVLTGTLPTLKRDEAQAMIEAAGGKVSGSVSK
KTDYVVAGEAAGSKLEKANALGVAVLDEAQLMALLNP
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaccgcccgccgcattcaagaacttaccgaacagctcaaccgctacgcttac
gaatactataccctcgacgcgcccaccgtgcccgatgccgagtacgaccggcttttccgc
gaactcgaagccctcgaagccgcccaccccgatttacgcctgcccgaaagccccacccag
cgcgtcggcggtatgcctttggacggctttgaaagcgtgcgccataccgtgccgatgctg
tcgctgaacaatgctttttcgccgcaagacgaaaacgacgcattcgatcacgccgaaatg
ctggcgtttgacgagcgcgtgcgcggcggattgtccggcgttcaacccgaatacgttatc
gaacccaaattcgacggcctcgccatcagcctgctctaccgcaacggcgtgctggttcag
gcggccacgcgcggcgacggtaccaccggcgaagacgttacccaaaacatcaaaaccatt
gccaatatcccgctgaaactgcgcggcgacaacctgccttcgctgcttgaagtgcgcggc
gaagtgctgatgctcaaagcggattttgccgccttaaacgagaaacaggctgccgacaac
caaaaactgtttgccaacccgcgcaatgctgctgcgggcagcctgcgccaactcgattcg
cgcatcaccgccaaacgccgcctgcattttttcgcttacggcattgcccacatcgaaggc
ggcgcacgtttggaagagcacattcaggagctggcttatttgtccgaactcggtttcagc
ctgccgcacgggcaattcggcgttttcccgaatatcgccgaaatactggcattttacgaa
cacatgtcgcaaaaacgccccgaacttccgtatgaaatcgacggtatggtggtaaaagtg
aacagcttggcgcagcaggaaactttgggtttcgtttcccgcgcgccgcgctgggccatc
gcgcacaaattccccgccgaagaagccttaaccgtggtcgaagcgattgacgtgcaggtc
ggccgcaccggagccgttacccccgtcgcccgcttgcagccggtatttgtcggcggcgtt
accgtaaccaacgccacgctacacaacgaaggcgaaacgcagcgcaaagacgttcgcgtg
ggcgacaccgtagtagtgcgccgcgcgggagacgtgattcccgaagtggtgcgcgtggtg
ttcgaacgccgcccgatgcaaaccattgccgaaaccgtttcagacggcctgcaaaaagat
ttatttgccgaaccggttaggccgtctgaaaacgtacaaaacgaacaaataccgctttac
ccccaataccgcctgcccgaacactgcccgatctgtgccagcgaaatcgaacgcgaagaa
agcgaagccgtggcccgttgcagcggcggcatgttgtgccaagcccagcgcgcgcaaggg
ctgattcattttgcttcgcgcaaagcgatggacatcgacggcttaggccagcggcaaatc
gagcagttggtcgcccaaaatctggtgcagcatttcgccgacctctaccgtttggatgta
ccgaccttgcagctgatgaaagaaaacgccgataaggaacaggctgccgatgccggcgaa
acggtttcagacggcctcaaaacaacggctaaaaaacagtcgccgaccaaatgggcggaa
aacattctcgccggtatcgaagccagcaagcagcccgagctggcgcgcttcctgttcgcc
ctcggcatccgccacgtcggcgagcgcacggccaaatcactggctcaagccttcggcacg
ctggaaaatgtgcgccgcgcccccgaacccgtgctggcctgcctgcccgacatcggtacc
gtcgtcgcccgttccatcacccatttcttcgcccaaccggagcagcaggccatgatagac
gaactgcttgccgtaggcgttgttccgcaaaaccaaactatttccctgcccctttcccaa
tatgttactccggccaaatggctcagccgcctgcccggtttcaaaatcagcgaaaccaaa
gccgccgccttgtgggatttggccggcaaaaacatagacagcctgttgaacgacaatgcg
ttgaatgccgactggcagcaatggcgaaaccaacccgaaaatgccgcccttttactgtct
atgcggcagtttctggaacagatgccgtctgaaaacaaagcatccgtttcagacggcctc
aaccaagccgtagccggaaaaaccttcgtgcttaccggcactttgccgacgctgaaacgc
gacgaagcacaagccatgattgaagcggcgggcggaaaagtgtccggcagcgtatcgaaa
aaaaccgattatgtggtcgcgggcgaagcggcgggcagcaaactggaaaaagccaatgcg
ctaggagtggcggtattggatgaagcgcagttaatggctttattgaatccgtag
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