KEGG   Nitrospirillum viridazoti: Y958_10080
Entry
Y958_10080        CDS       T04935                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
nao  Nitrospirillum viridazoti
Pathway
nao03030  DNA replication
nao03410  Base excision repair
nao03420  Nucleotide excision repair
nao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Y958_10080
   03410 Base excision repair
    Y958_10080
   03420 Nucleotide excision repair
    Y958_10080
   03430 Mismatch repair
    Y958_10080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nao03032]
    Y958_10080
   03400 DNA repair and recombination proteins [BR:nao03400]
    Y958_10080
Enzymes [BR:nao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Y958_10080
DNA replication proteins [BR:nao03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Y958_10080
DNA repair and recombination proteins [BR:nao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Y958_10080
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Y958_10080
   MMR (mismatch excision repair)
    DNA ligase
     Y958_10080
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Y958_10080
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: ASG21133
UniProt: A0A248JQV0
LinkDB
Position
1:2191107..2193380
AA seq 757 aa
MAAKQAIDALTLEDARAEHAQLVAEIGHHRTLYYQKDAPEISDADYDALERRLAAIEQRF
PELAGAHSPTATVGAAPAAGFGKVRHKVPMLSLGNAFEDEDVTDFVASIRRFLVLDEEAP
LDFVAEPKIDGLSLSIRYEDGQLVQAATRGDGAEGEDVTANVRTIDDIPNTLTGSVSGKR
APAILEVRGEVYMRREDFLALNKAQAEKGEKVFANPRNAAAGSLRQLDASITADRPLRFF
AYTWGELSEPLGATQSESRQRLAELGFTISEPSRLCRTADELLDYYRWIGGQRATLPFDI
DGVVYKVDRLDLQERLGFRTRTPRWATAHKYPAEKAQTLLKAISIQVGRTGALTPVAELE
PITVGGVVVSRATLHNEDEIRRKDVRVGDTVIVQRAGDVIPQIVGIVPALRPADSHPFEF
PTHCPACGSLAVRSTAEKADAAAEVVAVESGTPDDGTAVEGAEAPAPEETVAEPDGVVRR
CTGGLICPAQAVERLIHFTSRLAFDIEGLGIERMRLFHSQERIREPADIFTLEKRESERL
DRIVTMTGFGKKSVEKLFAAIEARRTIGLDRLIYALGIRQVGEATAKLLARHYLTVDHWR
DAMIKAAEERAVQPTERKPELVGEAYAELCAIEQIGVGVADDMMAFFREEHNRALLDRLL
AQITVETYQRPTTAGSPVVGKTVVFTGTLETMGRSEAKAKAESLGAKVAGSVSAKTDYVV
VGADAGSKATKARELGLTILTEQEWVDLISGKAGAPE
NT seq 2274 nt   +upstreamnt  +downstreamnt
atggccgccaagcaagccatcgacgccctgaccctagaggatgcccgggcggaacacgcc
cagctggtggcggagatcggccaccaccgcaccctctattaccaaaaggacgcgccggaa
atttccgacgccgactacgacgccctggagcggcggctggcagccatcgagcagcgcttc
cccgaactggccggcgcccacagtcccacggccacggtgggggccgcccccgccgccggc
ttcggcaaggtgaggcacaaggtgcccatgctgtcgctgggcaacgccttcgaggatgag
gacgtcaccgacttcgtggccagcatccgccgcttcctggtactggacgaggaagcaccc
ctggatttcgtggccgagcccaagatcgacggcctgtccctgtccatccgctatgaggac
ggccagctggtgcaagccgccacgcgcggcgacggggcggagggcgaggacgtcaccgcc
aacgtgcgcaccatcgacgacatccccaacacgctgacgggctcagtttccggaaaaagg
gccccggcgatcctggaagtgcggggcgaggtctatatgcggcgcgaggatttcctggcg
ctgaacaaggcgcaggcggagaagggcgagaaggtcttcgccaacccgcgcaacgccgcc
gccggcagccttcgccagctggacgccagcatcacggcggaccggcccctgcgcttcttc
gcctatacctggggggagctgtcggaaccgctgggcgccacccagtcggaaagccgccag
cgcctggccgagctgggcttcaccatcagcgagccgtcgcgcctgtgccgcacggccgac
gagctgctggactattaccgctggatcggcggccagcgcgccaccctgcccttcgacatc
gacggcgtggtctacaaggtggaccggctggatctgcaggaacgcctgggcttccgcacc
cgcacaccgcgctgggccaccgcccacaaatacccggcggagaaggcgcagaccctgctg
aaggccatcagcatccaggtgggacgcaccggcgccttgaccccggtggcggagctggaa
cccatcaccgtgggcggcgtggtcgtctcgcgcgccaccctgcataatgaggatgagatc
cgccgcaaggacgtgcgggtgggcgacaccgtcatcgtccagcgcgccggcgacgtgatc
ccccagatcgtgggcatcgtccccgccctgcgccccgccgacagccatcctttcgaattc
cccacccactgccccgcctgcggcagcctggccgtgcgctccaccgccgagaaggcggac
gcggcggcagaagtggtggcggtggaaagcggcaccccggatgacggcaccgccgtggag
ggtgcggaagcgcccgcccccgaggaaacggtggctgagccggacggcgtggtgcgacgc
tgcaccggcggcctgatctgcccggcccaggcggtggaacgcctgatccacttcaccagc
cgcctggccttcgacatcgagggcctgggcatcgagcgcatgcgcctgttccacagccag
gagcgcatccgcgagccggccgacatcttcaccctggaaaagcgggaaagtgaacggctg
gaccgcatcgtcaccatgaccggcttcggcaagaagtcggtggagaagctgttcgccgcc
atcgaggcccgccgcaccataggcctggaccgcctgatctacgccctgggcatccgccag
gtgggcgaggccacggccaagctgctggcccgccattacctgacggtggaccactggcgg
gatgccatgatcaaggcggcggaggagagggccgtccagccgaccgagcgcaagccggag
ctggtgggtgaggcctatgccgagctgtgcgccatcgagcagatcggcgtgggcgtggcc
gacgacatgatggccttcttccgggaggagcataaccgcgccctgctggaccgcttgctg
gcccagatcaccgtggaaacctaccagcggcccaccaccgccgggtcgcccgtggtgggc
aagaccgtggtcttcaccggcacgctggagaccatgggccgcagcgaggccaaggccaag
gccgagagcctcggcgccaaggtcgcgggttccgtcagcgccaagaccgactatgtcgtc
gtcggcgccgacgccgggtccaaagccaccaaggcccgcgagctgggcctgaccatcctg
accgaacaggagtgggtggacctgatcagcggcaaggccggcgccccggaataa

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