Nocardioides aquaticus: ENKNEFLB_03342
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Entry
ENKNEFLB_03342 CDS
T07580
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03030
DNA replication
naqu03410
Base excision repair
naqu03420
Nucleotide excision repair
naqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ENKNEFLB_03342 (ligA)
03410 Base excision repair
ENKNEFLB_03342 (ligA)
03420 Nucleotide excision repair
ENKNEFLB_03342 (ligA)
03430 Mismatch repair
ENKNEFLB_03342 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
naqu03032
]
ENKNEFLB_03342 (ligA)
03400 DNA repair and recombination proteins [BR:
naqu03400
]
ENKNEFLB_03342 (ligA)
Enzymes [BR:
naqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ENKNEFLB_03342 (ligA)
DNA replication proteins [BR:
naqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ENKNEFLB_03342 (ligA)
DNA repair and recombination proteins [BR:
naqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ENKNEFLB_03342 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ENKNEFLB_03342 (ligA)
MMR (mismatch excision repair)
DNA ligase
ENKNEFLB_03342 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ENKNEFLB_03342 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
Auto_anti-p27
BRCT_2
Prot_ATP_ID_OB_C
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QVT80941
LinkDB
All DBs
Position
complement(3439599..3441740)
Genome browser
AA seq
713 aa
AA seq
DB search
MSTPEPAPTEARDEHRQLVEDVEDARWRYYVLDDPTLDDADFDRRMRRLEELEEAHPELR
TPDSPTQKVGGAVSTEFTAVDHLRRMESLDNAFSDEELASWHARLARDGVVDPQLLVELK
VDGLAINLLYERGRLTRALTRGDGRTGEDVTPNVRTIDGVPTRLSGTDEHPVPDLVEVRG
EVFLPTAAFERLNEAMTEAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGAREG
FEPGSQSGAYDALAAWGLPVSDRVRVLDSLAEVREFVEHYGEHRHDVEHEIDGVVVKVDD
YALQRRLGSTSRAPRWAIAFKYPPEEVNAELLAIEVNTGRTGRVTPFGRMVPTRVAGSTV
EMATLHNAHEVRRKDVRPGDTVVLRKAGDVIPEIVGPVLALRPEGLPAWQMPTECPSCGT
PLTQQKEGDKDLRCPNHRACPAQALERVFHVAGRGAFDIEGLGSEAAHALLTAGVITDEG
DVFDLDEDKLLRTELFTRAAKKGEDADERGRVLSANGRSLLAGLAASREVPLWRVLVALS
IRHVGPTAARALATELGSMEAIRAATEEQLADADGVGPTIAEAVTEWFRVDWHASIVDRW
TRAGVSMADERDESVPRTLEGLTVVVTGSLEGYSRDSAKEAILSRGGKASGSVSKKTDFV
VVGENAGTKAEKAEQLGVPVLDEAGFTALLADGPPPAPEPVPEDPPEDPVQDS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgcccgagccggcgcccaccgaggcccgcgacgagcaccgccagctggtcgag
gacgtcgaggacgcgcgctggcgctactacgtcctggacgacccgaccctcgacgacgcc
gacttcgaccggcggatgcggcgcctggaggagctcgaggaggcccaccccgagctgcgg
acgccggacagcccgacgcagaaggtcggcggggcggtctcgaccgagttcaccgcggtc
gaccacctgcgccggatggagagcctggacaacgccttctccgacgaggagctggcctcc
tggcacgcccggctggcccgcgacggcgtggtcgacccacagctgctggtcgagctcaag
gtcgacggcctcgccatcaacctgctctacgagcgcggccggctgacccgggcgctgacc
cggggcgacgggcgtaccggggaggacgtcacgcccaacgtccgcacgatcgacggcgtc
cccacccggctgagcggcaccgacgagcacccggtgcccgacctggtggaggtgcgcggc
gaggtgttcctgccgaccgcggccttcgagcggctgaacgaggcgatgaccgaggccggc
aagccggtcttcgccaacccgcgcaacgccgcggccggctcgctgcggcagaaggacccg
cgggtcaccgcgacccgggcgctggggatggtctgccacggcatcggcgcccgcgagggc
ttcgagcccgggtcgcagtcgggggcgtacgacgccctcgccgcctggggcctcccggtc
tccgaccgggtccgcgtgctggacagcctggccgaggtgcgcgagttcgtcgagcactac
ggcgagcaccgccacgacgtcgagcacgagatcgacggcgtcgtggtcaaggtcgacgac
tacgcgctgcagcgccggctcggctcgaccagccgcgcgccgcggtgggcgatcgccttc
aagtacccgcccgaggaggtcaacgccgagctgctggccatcgaggtcaacaccgggcgg
accggccgggtgaccccgttcggtcggatggtgcccacccgggtggccgggtcgaccgtc
gagatggccaccctgcacaacgcccacgaggtgcgccgcaaggacgtgcgccccggtgac
accgtcgtgctgcgcaaggccggcgacgtgatccccgagatcgtcgggccggtgctcgcg
ctgcgtcccgagggcctgcccgcgtggcagatgccgaccgagtgcccctcgtgcggcacc
ccgctgacccagcagaaggagggagacaaggacctgcgctgccccaaccaccgggcctgc
ccggcccaggcgctcgagcgggtcttccacgtggccgggcgcggggccttcgacatcgag
ggtctcggctcggaggcggcgcacgccctgctgacggccggcgtgatcaccgacgagggc
gacgtcttcgacctcgacgaggacaagctgctgcgcaccgagctcttcacgcgtgcggcc
aagaagggcgaggacgccgacgagcgcggccgggtcctgtcggccaacggtcgctcgctg
ctggccgggctggcggcctcgcgcgaggtcccgctgtggcgggtgctggtggcgctctcg
atccgccacgtcggccccaccgccgcccgggcgctggccaccgagctcggctcgatggag
gccatccgcgcggccaccgaggagcagctcgccgacgccgacggcgtcgggccgacgatc
gccgaggccgtcacggagtggttccgcgtcgactggcacgcctcgatcgtcgaccggtgg
acccgcgcgggcgtctccatggccgacgagcgcgacgagtccgtcccgcgcaccctggag
ggcctcaccgtcgtggtgaccggctcgctcgagggctacagccgcgactcggccaaggag
gcgatcctgtcccgcggcgggaaggcctcggggtcggtctcgaagaagaccgacttcgtc
gtggtgggcgagaacgccggcaccaaggccgagaaggccgagcagctcggcgtccccgtc
ctcgacgaggcggggttcaccgcgctgctcgccgacggacccccgccggcccccgagccg
gtccccgaggacccgcccgaggacccggttcaggactcgtag
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