Novosphingobium aromaticivorans: Saro_1738
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Entry
Saro_1738 CDS
T00322
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03030
DNA replication
nar03410
Base excision repair
nar03420
Nucleotide excision repair
nar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Saro_1738
03410 Base excision repair
Saro_1738
03420 Nucleotide excision repair
Saro_1738
03430 Mismatch repair
Saro_1738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nar03032
]
Saro_1738
03400 DNA repair and recombination proteins [BR:
nar03400
]
Saro_1738
Enzymes [BR:
nar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Saro_1738
DNA replication proteins [BR:
nar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Saro_1738
DNA repair and recombination proteins [BR:
nar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Saro_1738
NER (nucleotide excision repair)
GGR (global genome repair) factors
Saro_1738
MMR (mismatch excision repair)
DNA ligase
Saro_1738
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Saro_1738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ABD26178
UniProt:
Q2G7J5
LinkDB
All DBs
Position
1832438..1834603
Genome browser
AA seq
721 aa
AA seq
DB search
MTTSALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLI
RPDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVM
TAEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAV
FEIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGW
GAASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVV
YKVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLV
GGVTVTNVTLHNRDEIGRLGLRVGDRIVLQRAGDVIPQVVENLTREEPRDPYHFPDHCPE
CGSEAVAEEGEVDVRCTGGLICPAQRVERLKHFVSRAALDIEGLGEKTIIEFFQLGWLES
PADIFRLRKRRSEIVGREGWKDKSVDNLLAAIEAKRQPDAARLLFGLGIRHVGAVTARDL
MKRFVTLPALREAARQASSAAREGEPANADGAYDPATVTPDSDTAGAEAGRSDALADLLS
IDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVSPPPYVVETKDSAVAGKTIVFTGKLETM
SRDEAKAQAEALGARTAGSVSAKTDLVVAGPGAGSKLKQAAALGIDVIDEAAWAEIVRQA
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatcggccctcaccgaagccgaagccgccaacgagctgatgcgcctggcaagg
cagatcgcgaagcacaaccgcctctatcatgcagaggattcgcccgagatcaccgatgcg
gaatacgatgcgcttgttcgccgcaatgctgaactcgaagctgcctttccgcacctgatc
cggcccgacagcccgagcgcgcagatcgggcacgagattgccgcttcgcccctgggcaag
gtgcagcacgaggttcgcatgatgagcctcgacaatgccttcaccgacgaggaggtcgag
gaattcgtcgcgcgcgtccgccgtttcctggcgctgcccgaagatgccgaagtggtgatg
accgccgaagacaagatcgacggcttgtcctgctcgctgcgctacgagaacggcaggctg
gtccgcgccgcgacgcgcggcgatggacaggtgggcgaggacgtgaccgccaacgtcgcc
cacatcccggacatcccgcaggagttgaaagccgccgggctgttcgacatccccgccgtc
ttcgagattcgcggcgaggtctacatggcgaaggacgatttcctcgccctcaatgcccgc
caggccgaagcgggcgaaaagatcttcgccaacccgcgcaacggcgctgcgggttcgctc
cgccagaaggacgccagcgtcaccgcaagccgtcctttgcgcttcctcgcccatggctgg
ggcgcggcgagcgaagtccccgctgccacccagttcgagatgatgcgcaagattgcggac
tggggcgtacctgtctcgccgctgctcgtgcgctgttcgtccgccgccgaaatggtcgcg
cactatcgcgacattggcgagaagcgcgcttcgctgccctatgacatcgacggcgtggtc
tacaaggtcgaccggctcgactggcaggaccggctcggcttcgtcgcgaaggccccgcgc
tggggcattgcccacaagttcccggcggaacgtgccgaaaccacgctcgatgccatcgac
atccaggtcggccgcaccggaaagctgacgccggtcggccgcctcaagccggtactggtc
ggcggggttaccgtcaccaacgtcaccttgcacaatcgcgatgaaatcggccgtctgggc
cttcgcgtgggcgaccgcatcgtcctccagcgggcaggcgacgtgatcccgcaggttgtc
gagaacctcacccgcgaagaaccccgcgacccttaccactttcccgaccattgccccgaa
tgcgggtccgaagccgttgccgaggaaggcgaggtcgacgtgcgctgcaccggcggcctg
atctgcccggcccagcgcgtcgaacgcctcaagcacttcgtcagccgcgccgcgctcgac
atcgaagggctgggcgaaaagacaatcatcgaattcttccagctgggctggctcgaaagc
cccgccgatatcttccgcctcaggaagcgccgcagcgagatcgtcggccgtgaaggctgg
aaggacaagtcggtcgacaaccttctcgccgcgatcgaggccaagcgccagcccgatgcc
gcccgcctgctgttcggccttggcatccggcatgtcggtgcggtcaccgcccgggacctt
atgaaacgcttcgtcacgcttcccgctctgcgcgaagccgcccggcaagcatcgtcggcg
gcacgggaaggggaaccggcgaacgccgatggagcgtacgatccggcaacagttacgccc
gattccgacactgccggcgcggaggcgggccgatccgatgccttggccgaccttctgtcc
atcgatggcgtcggcccggtcgtggtcgaggcgctaggcgatttcttccacgaaccccac
aacatcgccgtctgggaagatctgctttccgaagtctcgccgccgccctatgtcgtcgaa
acgaaggacagtgccgtggccggaaagaccatcgtgttcaccggcaagctcgaaaccatg
agccgtgacgaagccaaggcacaggccgaggccttgggcgcgcggacggcgggctcggtt
tcggccaagaccgatctggtcgtggcggggccgggcgcaggttccaagctgaagcaggcg
gcggcgctgggcatcgatgtgatcgacgaggcggcatgggccgaaatcgtcaggcaggcg
gggtaa
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