Candidatus Nitrotoga arctica: NTG6680_1588
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Entry
NTG6680_1588 CDS
T08244
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
narc
Candidatus Nitrotoga arctica
Pathway
narc03030
DNA replication
narc03410
Base excision repair
narc03420
Nucleotide excision repair
narc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NTG6680_1588 (ligA)
03410 Base excision repair
NTG6680_1588 (ligA)
03420 Nucleotide excision repair
NTG6680_1588 (ligA)
03430 Mismatch repair
NTG6680_1588 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
narc03032
]
NTG6680_1588 (ligA)
03400 DNA repair and recombination proteins [BR:
narc03400
]
NTG6680_1588 (ligA)
Enzymes [BR:
narc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NTG6680_1588 (ligA)
DNA replication proteins [BR:
narc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NTG6680_1588 (ligA)
DNA repair and recombination proteins [BR:
narc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NTG6680_1588 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NTG6680_1588 (ligA)
MMR (mismatch excision repair)
DNA ligase
NTG6680_1588 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NTG6680_1588 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
EHD_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
CAG9932841
UniProt:
A0ABM8YZ69
LinkDB
All DBs
Position
Ntg6680:1692650..1694701
Genome browser
AA seq
683 aa
AA seq
DB search
MSESVPQRIAHLRGEIERHNYQYHTLDAPLVTDAEFDAMFRELQILEIQYPSLATPDSPT
QRVGAVPLLSFAKVVHRSPMLSLNNAFNEDEVRAFDVRTRETLGVAEVEYSVEPKFDGLA
VTLTYRDGIFVQGATRGDGEVGEDVTHNLRTVRNLPLRLDSGRLTKPIPFIEIRGEVLMF
KVDFIALNRQQADRGDRLFANPRNAAAGSLRQLNSRITSSRHLSFLAYGAGAVEGFMLPE
THAEQLEYLQKLSVPVPQERRVVHGLEGLLAYYREIGELRRKLPYEIDGVVYKVNNISQQ
IKLGYVSRAPRFALAHKFPAEEALTTVLDIEVQVGRTGALTPVARLAPVFVGGVTVTNAT
LHNEEELRRKDIRIGDTVSVRRAGDVIPEVARILLERRPANAREFNMPRTCPVCGAHVTK
QPDEAIWRCSGGLFCPAQRKQALLHFASRRALDIEGLGEKLVDQLVEQQLVLTPADLYNL
YKLNLQTLAQLERMGEKSAQNLLDAIEHSKQTTLARFIYALGIRNVGEATAKELARHFAT
LDNFMTADETRLQLVPDIGPIVAQSISTFFAEPHNIEVITQLRAAGVQWPEQAEKAVQVL
PLNAKIFVLTGTLASMSRDEAKLRLETLGARVTGSVSQKTDYVVAGAEAGTKLGKAQQLN
IAVLDEQQFLQLLSTNEISSASG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatcagtgccgcagcgtatcgcgcatttgcgtggggaaattgagcgacacaat
tatcaatatcatacgttggacgctccactggttaccgacgcggaatttgatgcaatgttc
cgtgaactgcaaattctcgagatccaatatccctcactcgctacgccggactcgcctacc
cagcgagttggtgctgtgccgctactctcctttgccaaagtagtacatcgctccccaatg
ctttcgcttaacaatgccttcaatgaagacgaggtacgggcatttgatgttcgtacccgc
gagacattgggcgtggccgaagtagaatattcagtagaacctaaatttgatggcctggcc
gttacgctcacctatcgtgatggaatatttgtgcaaggcgctacgcgcggcgatggcgag
gttggcgaagatgtgacgcacaacctacgcaccgtaaggaatcttccattgcgattggat
tcagggcgattaaccaaacccattccgtttatagagatacgcggcgaggtgttaatgttc
aaggttgattttatcgcgctgaatcgccagcaagcagataggggcgacagactgttcgct
aatccacgcaatgccgcggcaggttcgttgcgccagcttaattcgcggattacatccagt
cgtcacctgagttttttagcctatggagcaggcgcggtcgaaggatttatgttgcctgag
acgcatgccgagcagttggaatatttgcaaaagttgtcagtgccggtgccccaggaacgc
cgtgtagtgcacgggcttgaagggttacttgcctattatcgcgaaattggtgaactgcgc
cgcaagctgccctacgaaattgacggcgtagtatataaagtcaacaacatctcccaacaa
atcaaattgggttatgtgtcgcgtgcaccgcgctttgctcttgcgcacaaatttccggca
gaggaggcattgaccaccgtcctggacattgaggtgcaagtgggccgcactggcgcattg
actccagtagcgcgcctggcaccagtatttgtcggtggggtaacggtaaccaatgccacg
ctgcacaatgaagaagaattgcgtcgcaaggatatccgcatcggcgatacggtaagcgtc
cgacgtgctggcgacgtcattccagaagtagcacgtatccttcttgaacggcgtcctgcg
aatgcgcgtgaattcaacatgccgcggacctgtccagtatgcggcgcacacgttaccaaa
cagccggacgaggcaatatggcgctgcagtggcgggctgttttgtccggcacaacgtaaa
caggcactgctgcatttcgccagccgtcgtgcactggatatcgagggacttggcgagaag
ctggttgaccaactggtggagcagcaactggtgcttacgcctgccgatttatataatcta
tataaactgaatttgcagacactggcccaactggagcgtatgggtgagaagtccgcccaa
aatttgctggatgcaatagaacacagtaagcaaaccacactcgctcgtttcatctacgcg
cttggtatccgtaatgtgggcgaggcgactgcgaaagaactggcgcgtcattttgctacg
ctggataatttcatgacggccgacgaaacacgcctgcaacttgtaccggatatcgggcct
atcgttgcgcaaagtatttcaacgttttttgctgagccgcataatattgaggtgatcacc
caattacgcgctgcgggcgtgcagtggccggagcaggccgaaaaggcagtacaggtatta
cctttgaacgctaaaatttttgttttaaccggtacgcttgccagcatgagtcgcgacgag
gcaaaattgagactggaaacgctcggcgcgcgcgtgacgggtagcgtgtcgcagaaaact
gattatgtggtggctggcgctgaggcgggtaccaagctcggcaaagcacagcaattaaat
attgctgtactggatgaacaacaatttttgcaactattaagcaccaacgaaatctcatca
gcctctggctaa
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integrated database retrieval system
