Nocardioides aromaticivorans: CFH99_17890
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Entry
CFH99_17890 CDS
T07236
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03030
DNA replication
naro03410
Base excision repair
naro03420
Nucleotide excision repair
naro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFH99_17890
03410 Base excision repair
CFH99_17890
03420 Nucleotide excision repair
CFH99_17890
03430 Mismatch repair
CFH99_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
naro03032
]
CFH99_17890
03400 DNA repair and recombination proteins [BR:
naro03400
]
CFH99_17890
Enzymes [BR:
naro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFH99_17890
DNA replication proteins [BR:
naro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFH99_17890
DNA repair and recombination proteins [BR:
naro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFH99_17890
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFH99_17890
MMR (mismatch excision repair)
DNA ligase
CFH99_17890
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFH99_17890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
BRCT_2
EHD_N
Motif
Other DBs
NCBI-ProteinID:
QSR27496
UniProt:
A0ABX7PNP8
LinkDB
All DBs
Position
complement(3722470..3724563)
Genome browser
AA seq
697 aa
AA seq
DB search
MSQADLPVVPPEVRDEHATTSEEIEEARYRYYVLDDPTLSDADFDKRLRRLEALEEQYPE
LRTPDSPTQKVGGAVSTDFTAVDHLQRMESLDNAFSFEELASWHARLDREGASGAALLCE
LKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVMTIKAVPHRLTGTDDYPVPDLVEV
RGEVFLPVAAFEALNVSMTEAGKPAFANPRNAAAGSLRQKDPRVTASRALGMVCHGIGAR
EGFEPKAQSEAYAALAAWGLPISEQVRVVPTLADVEAYITHAGEHRHTIVPYEIDGVVVK
VDDVTLQRRLGSTSRAPRWAIAFKYPPEEVNTKLLDIAVNVGRTGRVTPYGVMVPTKVAG
STVENATLHNFHEVERKDVRPGDTVILRKAGDVIPEIVGPVLPLRPEGLEPWVAPTTCPA
CGTGLVEQKEGDKDRRCPNHQKCPGQVRERVFFVAGRSAFDIEGLGYEAAVALLDAGVIT
DEGDVFDLDADKLRRTDLFTRAPKKDEEGPQLTANGAKLLANLDARKDVPLWRVIVALSI
RHTGPSASRALAQEFGSMAAIRAASEEELAAAEGVGPTIARAVIEWFEVDWHVAIVDKWT
AAGVSMEDARDESVARTLEGLTVVVTGSLVDFSRDSAKEAILSRGGKAAGSVSKKTDYVV
VGENAGSKVDKAEQLGVPVLDEDGFKRLLENGPDAAG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggccgacctccccgtcgtacctcccgaggtgcgtgacgagcacgcgacgacc
agcgaggagatcgaggaggcgcgctaccgctactacgtcctcgacgacccgacgctctcc
gacgcggacttcgacaagcggctgcgccggctggaggcgctggaggagcagtaccccgag
ctccggacgccggactcgcccacgcagaaggtcggcggggcggtctcgaccgacttcacg
gccgtggaccacctgcagcgcatggagagcctcgacaacgccttctccttcgaggagctc
gcctcgtggcacgcgcggctcgaccgcgagggagcgtccggcgcggcgctgctgtgcgag
ctcaaggtcgacggcctggcgatcaacctgctctacgagaagggccgcctggtccgggcg
ctgacccgcggcgacggccgcaccggcgaggacgtcacgcccaacgtgatgacgatcaag
gcggtgccgcaccggctcaccggcaccgacgactacccggtgcccgacctcgtcgaggtg
cgcggcgaggtgttcctcccggtcgccgcgttcgaggcgctcaacgtgtcgatgaccgag
gccggcaagcccgccttcgccaacccgcgcaacgccgcggccgggtcgctgcgccagaag
gacccgcgggtcaccgcctcgcgcgcgctcggcatggtctgccacggcatcggtgcgcgc
gagggcttcgagccgaaggcgcagtccgaggcgtacgccgcgctcgcggcgtggggcctg
ccgatcagcgagcaggtgcgggtggtgccgacgctggctgacgtggaggcctacatcacc
cacgcgggcgagcaccgccacacgatcgtgccctacgagatcgacggcgtcgtggtgaag
gtcgacgacgtcaccctccagcgacggctcggctccaccagccgggcgccgcggtgggcg
atcgcgttcaagtacccgcccgaggaggtcaacaccaagctcctcgacatcgcggtcaac
gtcggccggaccggccgcgtgacgccgtacggcgtcatggtgcccaccaaggtcgcgggc
tccacggtcgagaacgccacgctgcacaacttccacgaggtcgagcgcaaggacgtccgc
cccggcgacaccgtcatcctgcgcaaggccggtgacgtgatcccggagatcgtcggcccg
gttctcccgctgcggcccgagggcctcgagccgtgggtcgcgccgacgacctgcccggcg
tgcggcacggggctggtggagcagaaggagggcgacaaggaccgccgctgccccaaccac
cagaagtgcccgggccaggtccgcgaacgggtcttcttcgtcgccgggcgcagcgccttc
gacatcgagggactgggctacgaggcggcggtggcgctgctcgacgccggcgtgatcacc
gacgaaggcgacgtcttcgacctcgatgccgacaagctccgccggaccgacctcttcacc
cgggcccccaagaaggacgaggaggggccgcagctcaccgccaacggcgccaagctgctc
gccaacctcgatgcccgcaaggacgtcccgctctggcgcgtgatcgtcgcgctctcgatc
cgccacaccgggcccagcgcctcccgcgcgctggcccaggagttcggctcgatggccgcg
atccgcgccgcctccgaggaggagctcgccgccgccgagggcgtcggcccgaccatcgcg
cgcgccgtcatcgagtggttcgaggtcgactggcacgtcgcgatcgtcgacaagtggacc
gccgcgggcgtgtccatggaggacgcgcgcgacgagtccgtcgcccgcaccctcgaggga
ctgaccgtcgtcgtcaccgggtccctcgtcgacttctcccgcgactccgcgaaggaggcg
atcctgtcccgcggcggcaaggcggccggctcggtgtcgaagaagaccgactacgtcgtt
gtcggcgagaacgccggctccaaggttgacaaggccgagcagttgggcgtgccggtgctc
gacgaggacggcttcaagcggctgctggagaacggcccggacgccgcgggatga
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