Nicotiana attenuata (coyote tobacco): 109225522
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Entry
109225522 CDS
T05870
Name
(RefSeq) DNA repair protein RAD16-like
KO
K15083
DNA repair protein RAD16
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109225522
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
109225522
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
DEAD
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-C3HC4_4
NMB0537_N
zf-RING_6
zf-Nse
zf-rbx1
Mtf2
Motif
Other DBs
NCBI-GeneID:
109225522
NCBI-ProteinID:
XP_019245767
UniProt:
A0A1J6IXC7
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Position
5:24145119..24161846
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AA seq
926 aa
AA seq
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MKLRSFRPSSSIKGEGSYQYQDSSDEDSLSKKKDNEDDFLPMSSDSDYIGSSDEDEDIFN
LLREAQTNGVLDNDFSEEVLSDIIKRRKVGSSRKRSSKNIKSKEEQVEEEHVDRMMNEVG
CGVEVDSGYRLLMGRIEDRKKNRDKNKKKRPTLMWEIWEEENDRWMAENYTNDLDLDCQN
GLVNETAETPSDLLMPLLRYQKEWLSWALKQEESTARGGILADEMGMGKTVQAIALVLAK
REIGQAISESSLLSSAPCTSQELPAVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYH
GANREKNIHKFAEYDFVITTYSTVEAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQRYFCG
PDAVRTAKQSKQERKKSNPGGKTSKLKKESIKGKAKTDSDSEIETGSKRGRGKGVKRKIK
TDAGSIDDAAGVDQDMITRKSILHSVKWNRIILDEAHYVKDRRCNTTRAIFALESSYKWA
LSGTPLQNRVGELYSLVRFLQMIPYSYYFCKDCDCRVLDYSPTDCPHCPHKSVRHFCWWN
KYIASPIQSQGNRGTGRDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDV
KEEDYYTSLYNESQAQFNTYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARS
GNTDDSGYVEQPCGLCHDPVEDPVVASCTHVFCKSCLIDFSASVGQVSCPSCSKPLTVDF
TANDKGDQKTKPAVKGFRSSSILNRIRLNDFQTSTKIDALREEIRFMVERDGSAKAIVFS
QFTSFLDLIHYSLQKSGISCVQLVGSMSITARDSAITRFTEDPDCRIFLMSLKAGGVALN
LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELV
FEGTVGGSSEALGKLTEADLKFLFVT
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccgttctttccgtccttcgtcttcgatcaaaggagaaggaagctaccaatat
caggatagctctgatgaggatagcttatcaaaaaaaaaggataatgaggatgattttctt
cctatgtcttcggattcagattacatcggaagcagtgacgaagacgaagatatatttaat
ctgttgagggaagcccaaactaatggagttcttgataatgatttcagcgaggaagtttta
tccgatataataaaaagaaggaaagtgggatcctctagaaagaggagcagtaagaatatc
aaatcaaaggaagagcaggtagaagaggagcatgtagataggatgatgaatgaagtagga
tgtggggttgaagtagatagtggctaccgtctattgatggggaggatagaggataggaag
aagaaccgcgacaagaataaaaagaagagacccactttgatgtgggagatctgggaagaa
gagaacgatcggtggatggctgaaaactatacaaatgatttagacttggattgtcagaac
gggttggtgaatgaaactgctgagacaccatctgatttgcttatgccgttgctgaggtac
cagaaagagtggttgtcgtgggcattgaagcaagaagaatctactgctagaggcggtatt
cttgccgacgagatggggatgggaaagactgttcaagccatagctcttgtgcttgctaaa
cgcgaaatagggcaagcaatttctgaatccagtttactgtcatctgccccttgtacttcc
caggagctcccagcagtgaaaggaactcttgttatatgtcctgttgttgctgtgattcag
tgggtcagtgagattgaccgctttaccactaaaggaagcaacaaaattcttgtttatcat
ggtgcaaacagggagaaaaatatccacaaattcgcagaatatgattttgttatcaccaca
tactccacagtggaggctgagtataggaaaaatgtgatgccaccaaaagaaaaatgtcag
tggtgtggaaaatctttttatgaacagaagttgtctgttcaccagagatacttctgtgga
ccagatgctgttagaactgctaagcaatcaaagcaggagaggaagaagtcaaatcctgga
ggaaagacgtcaaagctgaaaaaagaatctattaaaggcaaggctaagacagacagtgat
tcagagattgagacaggtagtaaaagaggtcgtgggaagggcgtgaagcgcaagatcaag
acagatgctggttctattgatgatgcagccggtgttgatcaagatatgatcacgaggaag
tcaattttgcactctgtaaaatggaaccgtatcattttggatgaggcccattatgtgaaa
gatagacgctgcaatactacaagagctatttttgcgttagaatcttcttataagtgggcg
ttaagtggtactcccctccagaaccgtgtaggagagttgtactcacttgttcgtttcctg
caaatgattccttactcgtactacttctgcaaagattgtgattgcagagtgttggactat
agcccaaccgactgcccacattgcccccacaaatctgttcggcacttttgttggtggaat
aaatatattgcctcacccatacaatctcaagggaatcgtgggactggaagagatgcgatg
gttttgttgaaacacaaaattttgaaaagcatattgctaagacgtactaaaaagggaagg
gctgctgatcttgcacttcctcccaggattgttaccttgcgcaaagattctttggatgtt
aaagaagaagactactacacatcactgtacaatgaaagccaggcacaatttaatacatac
attcaagctggtactctgatgaataactatgctcacatttttgatctactcacacgcctg
cgacaggcagttgatcatccttaccttgtggtatactctagtactgctttggctagaagt
ggaaacactgatgattctggctatgttgaacaaccatgtggtttatgtcatgatccagta
gaagatccagttgttgcttcttgcacacatgtcttttgcaagtcatgtctgatagatttt
tctgcaagtgtggggcaagtgtcatgcccttcatgttctaaaccacttacagtggatttc
actgcaaatgacaagggggatcagaaaactaaaccggctgtcaaagggtttaggtcatca
agtatactgaacagaattcgtcttaatgatttccagacaagcacaaaaatagatgctttg
agagaagaaataaggttcatggttgaaagagatggttctgcaaaagcaatagttttcagc
caattcacatcgtttttggatctgatacactattctctacagaagtcgggcatcagttgt
gttcaattagttggatccatgtctataactgcaagagattctgcaattacaagatttacc
gaggatccagattgcaggatattccttatgagcttaaaagctggaggtgttgccctcaat
cttacagtggcatcacatgttttcttgatggatccttggtggaatcctgctgtggagcag
caagcccaagatagaatccatcgaatagggcagtataaaccaatcaggattgtgagattt
gtgattgagaatacaattgaggagaggatcttaaagttgcaagagaaaaaggaactggtt
tttgaagggacggtcggtggctcttcggaggccttgggaaaactaacagaggcagacttg
aaattcttgttcgtaacctaa
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