Nicotiana attenuata (coyote tobacco): 109230535
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Entry
109230535 CDS
T05870
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109230535
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
109230535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4
zf-C3HC4_2
ResIII
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-rbx1
zf-Nse
zf-C3HC4_4
zf-C2HC_2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
109230535
NCBI-ProteinID:
XP_019251567
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All DBs
Position
7:72864419..72872087
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AA seq
815 aa
AA seq
DB search
MERISERKFYRAERLIRSQVVRPTLMWEKWEEENDKWLAEHYPNDLDLDNQNELVCETAE
PPSSMTVPLFRYQKEWLFWSLKQEESSTKGGILADEMGMGKTIQAIALVLAKRELGKPIS
ESSLLSSSLSTTQELPAVKGTLIICPVVAAIQWVNEINRCTSEGSNKILVYHGNKRNHIH
NIEEYDFVITTYSTVEAEYRKNVMPPKQKCQWCGKSYFEDKLSIHQKKCGPDSVKNSNQS
KQQRKKLKLGVELLKQETDSMESETIMQKTDSTDLEANVQKADSIESETDVQKTGHRKSM
KHSMTEEGKNDGSINNSASVCQDLSRKKSILHSVKWDRIILDEAHYVKGRRCNTTKATLA
LESSYKWALSGTPIQNLVGELYSLVRFLQIVPYSFYFCKDCDCRTLDYSSTAECPRCPHK
SVRHFCWWNRYIATPIKREGNSGSGRDAMFLLKHKILKSILLRRSKKGRAADLALPLKIV
TLRKDSLDIKEEDYYMSLYNKSQAQFNTYVQAGTVMNNYAHIFELLIRLRQAVLHPYLVV
YSSTALAKIGSMDSGNIEQPCGLCQDTVEDPVITSCNHAFCKTCLIDFAASVGQVSCPLC
SELLTVDLSANNDKADQKSKPTLKGFRSSSIVNRIQLDDFQSSTKIDALREEIRFMIERD
GSAKGIVFSQFTTFLDLIHYSLQQSGINCVQLVGSMSIAARAAAVTRFTEDPDCSIFLMS
LKAGSVALNLTVASHVFIMDPWWNSAVERQAQDRIHRIGQYKPVRIVRFAIENTIEEKIL
KLQEKKELVFEGTIGGSSEAFGKLTEEDLKFLFVT
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaataagcgaaaggaaattttaccgcgctgagaggctgatacgcagccaagtt
gttagaccaactttaatgtgggagaaatgggaagaagagaatgacaaatggcttgcagaa
cattatcccaatgatttggacttagataatcagaatgagttagtttgtgaaacagcggag
ccaccatcaagtatgactgtgccactgtttaggtaccagaaggagtggttgttttggtca
ctcaagcaagaagaatcttcgaccaaagggggtattctcgctgatgagatggggatgggg
aaaactatccaagcgatagcacttgtgcttgctaaacgggaattagggaaaccaattagt
gaatccagcttattgtcatcttcactcagtacaacacaggaactcccagcagtaaaaggc
actcttatcatatgtcctgtggttgctgccattcagtgggttaatgagatcaatcgatgc
accagtgaaggaagcaacaagattcttgtttatcatggcaacaaaaggaatcatatccac
aatattgaggaatatgattttgtcatcactacttactccactgttgaggctgaatatagg
aaaaatgtgatgccgccaaaacagaagtgtcagtggtgtggaaaatcttattttgaagac
aagttgtccattcaccagaagaagtgtggacctgattctgttaaaaattccaaccagtca
aagcagcagaggaagaagttaaaacttggggtagaattgttgaagcaggaaacagattct
atggagtcagagactattatgcagaaaacagattctacggatttagaggctaatgtgcag
aaagcagattctattgagtcagagaccgatgtgcagaagacaggtcataggaagagcatg
aagcatagcatgacagaagaagggaagaatgatggttctattaacaattcagcaagtgtg
tgccaagatttgtcacggaagaagtcgattttgcattcagtaaagtgggatcgcatcatc
ttggatgaggctcattatgtaaaaggtaggcgctgcaacacaacaaaagctactcttgct
ttggaatcttcttataagtgggccttaagtggtactccgattcagaatcttgttggagaa
ttgtattcacttgtccgtttcctacaaatagtaccctactctttttacttttgcaaggat
tgtgattgcagaacactcgactatagctctacagctgagtgcccacgatgcccccacaaa
tctgtacggcacttttgctggtggaatagatacattgctactcctataaaacgtgaaggg
aattctgggagtggtagagatgcaatgtttcttttgaaacacaaaattctaaaaagcatc
ctactaagacgtagcaaaaaaggaagagctgctgatcttgcacttcctctgaaaattgta
actttgagaaaagattctttggatatcaaagaagaagactactacatgtcgttgtacaat
aaaagccaggcacagtttaatacttatgttcaagctggaacggtgatgaataactatgca
cacatttttgagctgctcatacgcctacggcaggcagttcttcatccttaccttgtggta
tactcgagtactgctttggcaaaaattgggagcatggactctggaaatattgagcaacct
tgtggattatgtcaagatacagtagaagatccagtaattacttcttgcaaccatgccttt
tgcaagacgtgtttgatagacttcgctgcaagtgtgggacaagtatcatgccctctgtgt
tctgaactacttacagttgacttaagtgcaaataatgataaggcggatcagaaatctaaa
ccgactctcaaaggatttaggtcctcaagcatagtgaacagaattcagctcgatgatttc
cagtccagcactaaaatagatgcattgagggaagaaatcaggttcatgattgaaagagat
ggttctgcaaaaggaatagttttcagccagttcactacatttttggatctgatacactat
tctcttcagcagtcgggcatcaattgtgttcaattagttggatccatgtctattgctgca
agagctgcagcagttaccagatttactgaagatccagattgcagcatttttcttatgagc
ttgaaagctggaagtgttgcactcaaccttacagttgcatcacatgttttcataatggat
ccttggtggaattctgctgtggagcgccaagcccaagatagaatccatcgaataggacaa
tacaaacctgttaggattgtgagatttgcgattgaaaatacaattgaggagaagatctta
aagttgcaggagaagaaggaacttgtttttgaagggacaattggtggctcttcagaggcc
tttgggaaactaacggaagaagacttgaaattcttgtttgtgacttaa
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