Nicotiana attenuata (coyote tobacco): 109233105
Help
Entry
109233105 CDS
T05870
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
109233105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109233105
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109233105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Coilin_N
Motif
Other DBs
NCBI-GeneID:
109233105
NCBI-ProteinID:
XP_019254413
UniProt:
A0A1J6IFK7
LinkDB
All DBs
Position
10:18875725..18895312
Genome browser
AA seq
817 aa
AA seq
DB search
MGIPAFYRWLLERYPQSVVEVNEETPAVINGVTVPIDTSDPNPNGIEFDNLYLDMNGIIH
PCFHPEGLPAPETHEEVFKAVFKYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRARRFR
AAKDAGDEASDTGRIRGNDETEREDLSTKRLDSNVITPGTKFMELLSSALQYYIRLKVNV
DSGWQGIKVILSDASVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALASH
EVHFSILREDVRKDKSKYRGQQNRQDMYRQQAGRHSKKGEGCGKDLENLISEQKFQFLKV
WVLRDYLGYELQIPDPTVKLDLERLIDDFVFMCLFVGNDFLPHVPSLEISEGAIDLLIDV
YKKEFVNMGGYLTDSCQVNLERAGHFIQAIGSYENAVFRKRIQVQKHWGIHMQRPTLNLA
VQQNQDKSNHVQAKTLSVVDKVKLGEEGWKERYYLEKFEVQTEEDCVKIQRDAVLKYVEG
ICWVMHYYYQGVCSWQWFYPYHYAPFASDFHDLDRLKIHFTIGKPFKPFDQLMGVLPAAS
AQALPFSYRKLMTDPLSPILDFYPSDFELDINGKRHAWQAVCKLPFIEESRLLSEIANVE
DTLTVDEKHRNSLGLDMLFVYLSHPLATKIPAFCARNKDNPKLPKAKVKRKINPKFSHGM
NGFIYLSDKPVCPVEIYPPVEDMDVITDNKVISVFYKVPSFHPHIPKPPKGVIMPRKVIS
EDGVQPQPLLWHEKTAVAEHRYSRRYIPHNSVSGPRLAKLAHQLVSENCFLKHQVNGDGG
NDSHSKKRKKPRSADRKKRTGAERKKRKKQRQETVVC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacctgcattctatcgttggttactggagcgttatccacagtctgttgttgag
gttaacgaagaaaccccagccgtcattaatggggtcactgtcccaattgacactagcgac
cctaatcccaacggcattgaattcgataatctctatttggatatgaacggaatcattcac
ccttgttttcatccagaaggcctgcctgccccggagacacatgaggaagtctttaaagcg
gttttcaagtacattgatagaatattttcaattgttaggcctcgcaagcttttatacatg
gcgattgatggtgttgcaccacgtgccaaaatgaatcaacagcgtgcgagacgtttcaga
gctgctaaagatgctggtgatgaagcctctgatacagggagaataagagggaatgatgaa
acagaacgggaagatttaagtactaaaaggttggattcaaatgttattacacctggaacg
aaattcatggaactgctgtcatctgcacttcaatactatatacgtttgaaagtgaatgta
gactctggttggcagggaatcaaggttattctctccgatgctagtgtgcctggtgaaggg
gagcataagataatgtcttatattcgcttgcaaaggaatcttccaggatttgatcctaat
acacggcattgcttgtatggtttggacgcagacttgataatgctggcattggcgtcacat
gaagttcacttttcaattctaagggaggatgtccgcaaagataaatcaaaatatagaggt
caacagaataggcaagatatgtatagacaacaagcaggtaggcactcaaaaaaaggggaa
ggatgcggcaaggacttggagaacttaatatcagaacagaagtttcagtttcttaaagta
tgggtactcagagattatttgggatacgaacttcaaattccagatccaactgtcaaacta
gacctggagcgactgatagatgattttgttttcatgtgtttatttgttggaaatgatttt
cttccccatgtgccatctttggagatatcagagggagccattgacttactgattgatgtc
tacaagaaggaatttgtcaatatgggtggctatcttactgattcttgccaggttaatttg
gagagggcggggcactttatacaagccattggttcttatgagaatgctgtctttaggaag
cgtatccaggtacagaagcattgggggatacacatgcaacgccctacattaaatttggct
gttcagcagaatcaggacaaaagtaaccatgtacaagccaagaccctttctgtggttgat
aaggttaaattaggagaagagggctggaaagagagatactatttggaaaaatttgaggtt
caaaccgaagaagattgcgtcaaaattcaaagggatgcggtcttgaaatatgttgaagga
atatgttgggtcatgcattattactaccaaggagtgtgctcctggcaatggttttatcct
tatcactatgctccatttgcatctgattttcatgatcttgaccgattgaaaatccacttc
acaattggcaagcccttcaagccttttgatcagctaatgggtgtccttccagctgcaagt
gcacaagcacttcccttttcttacaggaagttgatgacagatccattgtcccctatttta
gacttctatcctagtgattttgagcttgatatcaatgggaagaggcatgcttggcaggct
gtttgtaagctgccatttattgaagagagccgtcttctatctgagattgcaaatgttgaa
gatactttaacggttgacgaaaagcacagaaacagtctcggccttgatatgttgtttgtt
tacttgtcacatcctctagcaacgaagatccctgctttttgtgcaaggaacaaggacaat
ccaaagttgccaaaggctaaagtgaaaaggaaaatcaatcccaagttcagtcatggaatg
aatggattcatatatctttctgataagcctgtatgtcctgttgagatctatccacccgtt
gaggacatggatgtgataacagataataaagtcatatctgtgttttataaagtcccttct
ttccatcctcacattcctaagccaccaaaaggagtaataatgcctagaaaggttatctct
gaggatggagtccagcctcaacctttattatggcacgagaagacagctgttgctgaacac
agatattctagaaggtacataccccacaattctgtatcaggacctcgtttggcaaaattg
gctcatcagcttgtatcagaaaactgtttcctgaagcaccaagtgaatggagatggtggc
aatgatagccacagtaagaaacgaaagaagccgcgtagtgctgatagaaagaagcgtacc
ggtgctgaaagaaagaagcggaagaagcaaagacaagagacagtagtgtgctag
DBGET
integrated database retrieval system