Natronoglycomyces albus: JQS30_06505
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Entry
JQS30_06505 CDS
T07203
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nav
Natronoglycomyces albus
Pathway
nav03030
DNA replication
nav03410
Base excision repair
nav03420
Nucleotide excision repair
nav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQS30_06505 (ligA)
03410 Base excision repair
JQS30_06505 (ligA)
03420 Nucleotide excision repair
JQS30_06505 (ligA)
03430 Mismatch repair
JQS30_06505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nav03032
]
JQS30_06505 (ligA)
03400 DNA repair and recombination proteins [BR:
nav03400
]
JQS30_06505 (ligA)
Enzymes [BR:
nav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JQS30_06505 (ligA)
DNA replication proteins [BR:
nav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQS30_06505 (ligA)
DNA repair and recombination proteins [BR:
nav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JQS30_06505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQS30_06505 (ligA)
MMR (mismatch excision repair)
DNA ligase
JQS30_06505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQS30_06505 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
HHH
BRCT_2
HHH_3
Bactofilin
PGRL1_N
DUF8259
PRCH
Motif
Other DBs
NCBI-ProteinID:
QSB06984
UniProt:
A0A895XNQ2
LinkDB
All DBs
Position
1520412..1522658
Genome browser
AA seq
748 aa
AA seq
DB search
MGPVNTENIVDLEGARERHADLSDQITAHRKRYYDEDAPTISDAEFDSLLQELIALEETF
PQLATAESPTQQIGTFSTLFTPVDHAEPMLSLDNVFNEEDLRTWSERVTVDAPDAAYLCE
VKLDGLAVNLTYEDGFLTRGATRGDGRTGEDVTANVRTIEGIPHRLKGTDEFPVPAFVEV
RGEVYIPREEFLKLNQAREQANLEAKEKAEAEGKTKLPKGEPLFANPRNAAAGSLRQKKS
EVTRRRALRLMAHGIGARRGFEPDSQSHAYEALEAWGLPTIPDRIVASTFDEALEYVRHM
ESSRHDLDYEIDGAVIKIDNIATQRRLGHTSRAPRWATAYKFAPEEVHTRLLDIKVGIGR
TGRATPYAVLEPVRVAGSEVEFATLHNADQVKAKQVLIGDTVVLRKAGDVIPEIVAPVVP
ARDGSEREFHMPQRCPECDSPLAPASEGDVDLRCPNSQKCPAQLRERLTYLSGRSCFDID
DMGFVSCVALTQPLEPKEPPLVDEGGVFDLTAEQLLPIKALVLDRDTGLPKKNDDGTDKV
VTPFARVEKSPDGIEHVVLRANAVKMLANLQKAKSQPLWRVINALSIRHVGPVAAQALAD
AFGDLDRIREASQEELSEIDGVGPTIARAIRDWFSVDWHVGIVERWRASGVRMREDVTET
AAIRATLEGATVVITGTLEGHTRDEAAAAVKARGGKVTGSVSKKTSVLIAGENAGSKYDK
AMKLGIPVVNSEGFAHLLTEGLEAATSQ
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atagggcctgtgaacacggagaacattgttgatcttgagggcgcgcgcgagcgccatgcc
gacctgtccgaccaaatcaccgcgcatcgcaagcgctactacgatgaggacgcgcccacg
atttcggacgccgagttcgactctttgctgcaagaactgatcgctctggaggaaaccttt
ccccagttggcgaccgcagagtctcccacccaacaaatcggtacgttttcgaccctattt
acccctgtggaccatgccgagccgatgctcagccttgacaatgtattcaacgaagaagac
ttgcgaacctggtcggagcgggtcacggtcgacgctcccgacgcagcctacttgtgcgag
gtgaaactcgacggcctggcagtcaacctcacatatgaggatggcttcttgaccaggggc
gcgactcgtggtgatgggcgtaccggggaggatgtcacggcaaacgtccgcacgatcgaa
ggtatccctcatcggctcaagggcaccgatgagttcccggtaccggcctttgtggaggtt
cgcggagaggtctacatcccgcgagaggagttcctgaaactcaatcaagctcgcgaacag
gcaaacctggaggcaaaggagaaagcggaggcggaaggcaagaccaagcttcccaaaggt
gaacctctcttcgccaaccctcgcaacgctgccgcaggctccctgcggcaaaagaagtcc
gaggtcacacgccggcgagcgctacggctcatggcgcatggcattggggctcgccgtggt
ttcgagccggacagccagtctcacgcctatgaggctctggaagcgtgggggctgccgaca
attcccgatcgcatcgtcgcctccacgtttgatgaggcgttggaatatgtgcgtcacatg
gagtcgtcccgacacgatttggactacgagatcgacggcgctgttataaagatcgacaac
atcgccacgcaacgccgactcgggcacaccagtcgcgccccgcgttgggccaccgcatac
aagttcgcccccgaagaggtccacactcgtttgctcgacatcaaggtcggcatcggtcgc
actggccgggccaccccttatgcggtcctggaaccagtccgggtggctggttctgaagtc
gaattcgccactctccacaacgccgaccaggtcaaggccaagcaggtcctcatcggagac
acggtggtgctgcgcaaagcaggagacgtgattcctgagatcgtcgcaccagttgttccc
gcccgcgacggttccgaacgcgaattccacatgccccaacgctgcccagagtgcgactct
cctctggctcccgccagtgagggggatgtcgatcttcggtgtcccaattcccaaaaatgt
cccgctcagctgcgggaacgcctcacgtacctatcgggtcgttcgtgctttgacatcgat
gacatgggttttgtctcatgtgtggctcttacccagccccttgagccaaaggagccgccg
ctggtcgacgaaggaggagtcttcgatttgaccgccgagcaactgctgcccattaaggct
ttggtcctcgatcgtgacacgggtttgcccaagaagaacgacgatggcaccgacaaggtc
gtcaccccgtttgcgagggttgagaaatcccccgacggcatcgagcacgttgtcttgcgc
gctaacgcggtcaagatgctcgccaatctccagaaggccaaatcgcagccgctgtggagg
gtgatcaacgctctgtcgatccgccacgttggcccggtggccgctcaggcgctggcagat
gccttcggcgacttggaccgtattcgggaggcctcccaggaggagttgtcggaaatcgat
ggagtcggtccgacgatcgcgcgtgcgattcgagactggttctccgtggattggcatgtg
ggcattgtggagagatggcgagcctctggcgtgcggatgcgtgaggatgtgaccgaaact
gctgcgattcgggccacgttggagggtgcaactgtggttattactggcactctggagggc
cacacccgtgatgaggccgcggccgcggtgaaggcgcgcggggggaaagtcaccgggtcg
gtttcgaagaagacttcagtcctcatagcgggggagaatgccggttcgaaatacgataag
gcgatgaaattgggcattcccgtcgtaaattccgaggggttcgcacatttgctcacagag
ggcctcgaggcggctactagtcaataa
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