Neisseria arctica: LVJ86_03925
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Entry
LVJ86_03925 CDS
T08172
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
naw
Neisseria arctica
Pathway
naw03030
DNA replication
naw03410
Base excision repair
naw03420
Nucleotide excision repair
naw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
naw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ86_03925 (ligA)
03410 Base excision repair
LVJ86_03925 (ligA)
03420 Nucleotide excision repair
LVJ86_03925 (ligA)
03430 Mismatch repair
LVJ86_03925 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
naw03032
]
LVJ86_03925 (ligA)
03400 DNA repair and recombination proteins [BR:
naw03400
]
LVJ86_03925 (ligA)
Enzymes [BR:
naw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVJ86_03925 (ligA)
DNA replication proteins [BR:
naw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVJ86_03925 (ligA)
DNA repair and recombination proteins [BR:
naw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVJ86_03925 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVJ86_03925 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVJ86_03925 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ86_03925 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UOO87404
LinkDB
All DBs
Position
879945..882359
Genome browser
AA seq
804 aa
AA seq
DB search
MENPVQRIRSLTELLNRYAYEYYTLDTPSVPDAEYDKLFRELQALEAEYPQYREKDSPTQ
RVGGQPLAGFDSVVHTVPMLSLNNAFSPQDENGVFDHTEMLAFDERIKSGLSGVEYEYVI
EPKFDGLAVSLLYQNGVLVQAATRGDGSTGEDVTQNVRTISNVPLRLQGSNVPEMIEVRG
EVLMLKADFAALNAKQEAEGQKIFANPRNAAAGSLRQLDSRITARRRLHFFAYGIARIEG
GNTCSEHSKELAYLSTLGFSLPHGNFGCFDNIGSVLAFYETVSARRAELPYEIDGMVVKV
NSLAQQDMLGYISRAPRWAIAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLKPVFVGGV
TVTNATLHNEGEARRKDVREGDTVVVRRAGDVIPEVVRIVPERRPMIVQSVDAGGQPDLF
GEKDNTVGQVPKYPPYSLPASCPICGSGIEREEGEAVARCSGGMLCQAQRAQGLIHFASR
KAMDIEGLGQKQIEALVAQDLVRHFADIYRLNVPILQRMKENGTVEETDTVKTEAQKKSS
PTKWAENILAGIETSKTPDLARFLFALGIRHVGERTAKVLAQAFGSLERVRRAPEPLLAC
LPDIGGVVAHSVAQFFASPEQNTMLDDLLAVGVLPKSQPVVLNPAEYAAPQRWLARLPDF
KLSETRAAALWDLAGCSVEGLLHDKALPIEWQQWRSQLKNKVLLEQIQNFLTEILSEGGQ
QMVSDGLSDKVVGKTFVLTGTLSNLKRDEAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGS
KLEKARSLGIAVLDEGGLLALLQS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatccagttcaacgcatccgctccctcaccgaactacttaatcgttatgcttac
gaatactatacattggatacgcccagtgtacctgatgccgagtacgataaactttttcgg
gaattacaagctttagaggctgaatatcctcaataccgagagaaggatagccccacccag
cgggtaggcgggcagccgttggcgggatttgatagtgttgtgcatacagtgcctatgctt
tccttaaataatgctttttccccgcaagatgaaaatggtgtatttgatcacaccgagatg
ctggcttttgacgagcgcataaagagcggtttgagtggagtggaatatgaatatgtcatt
gagccgaaatttgacggcttggcagttagcctgttgtatcaaaacggtgtgttggtacaa
gccgcaacacggggggatggttcgaccggtgaggatgtaactcaaaatgtacgaacaatc
agcaatgtaccgttgcgcttgcaaggtagtaacgtacctgaaatgattgaagtacgcggt
gaagtattgatgttaaaggctgattttgctgctttaaatgccaagcaagaggcggaaggg
cagaaaatatttgccaatccgcgtaatgcggcagccgggagtttgcgacagctggactca
cgtattacagcccgtcgccgcttacatttttttgcctacggtattgcccgtatcgaggga
ggcaatacttgtagcgagcatagtaaagaattggcatatttaagcacattgggcttcagt
ctgcctcatggaaatttcggttgttttgacaatattggttcggtgctggcattttatgag
accgtatctgcccgtagggctgaattaccgtatgaaattgacgggatggtggtaaaagtc
aattcactggcacagcaggatatgcttggatatatatcccgtgctccacgctgggcaatt
gcacataaatttccggcggaagaagcattaacggtggttgaagcgattgatgttcaggtg
gggcgtaccggtgctgttacacctgtggcgcggctaaaacctgtatttgtcggaggggta
accgttactaatgctacattgcataacgagggagaagcgcgccgtaaagatgtacgtgaa
ggtgatactgttgtggtgcgccgtgcaggggacgtgattccggaggtcgtacgtattgtg
ccggagcggcggccgatgattgtgcaatcggtagatgcgggaggccaaccggatttgttt
ggcgagaaggataatactgtcgggcaggtacctaaatatcctccttatagtttgccggca
tcctgtccgatttgcggaagcggcatcgagcgggaagaaggcgaagcagtagcacgctgc
agcggcggaatgttatgccaggcacagcgtgcacaaggattgattcattttgcctcgaga
aaagctatggatatcgaggggttggggcaaaaacagattgaagctttggtagcgcaagat
ttagtgcgtcattttgccgacatctatcgtttgaatgttccgatactacagcgaatgaag
gaaaacggtaccgttgaggaaacggatacggtaaaaacagaggctcagaaaaaatcttcg
cctaccaagtgggcggaaaatatcttggccggtatcgagactagtaaaacacctgatttg
gcaagatttttatttgctttgggcatccgtcatgttggcgaaagaactgccaaagtgttg
gctcaggcattcggttctttagagcgtgtacgccgcgcccccgagccgttattggcctgt
ttgccggatatcggcggtgtggtggcgcattcggtagcacagttttttgccagccccgaa
caaaatacaatgctggatgatttgttggctgttggcgtattaccgaaaagccagccggtt
gttttaaatccggcggaatatgcagctccgcaacgttggttggcaaggctgcctgatttt
aaattaagcgaaactcgggcagcggcattgtgggatttggcaggctgtagtgtagaagga
ttgttgcacgataaggctttgccgatcgaatggcagcaatggcgcagccaacttaaaaat
aaagtattattagagcaaatacagaattttttaacagaaattttgtctgaaggcggccag
caaatggtttcagacggcctaagcgataaagttgttggcaaaacttttgtgttgacaggt
acattgtcgaatctgaaacgtgatgaggctcaggccatgatcgaagcggctggtggtaaa
gtatcgggtagtgtatcgaaaaaaaccgattatgtggttgcaggtgaggcagccggcagt
aaattggaaaaagcccggagtctaggcatagcggtattggacgagggcgggctattggcg
ctattgcaaagttaa
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