Aquisalimonas sp. 2447: HC341_04875
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Entry
HC341_04875 CDS
T06517
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nax
Aquisalimonas sp. 2447
Pathway
nax03030
DNA replication
nax03410
Base excision repair
nax03420
Nucleotide excision repair
nax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HC341_04875 (ligA)
03410 Base excision repair
HC341_04875 (ligA)
03420 Nucleotide excision repair
HC341_04875 (ligA)
03430 Mismatch repair
HC341_04875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nax03032
]
HC341_04875 (ligA)
03400 DNA repair and recombination proteins [BR:
nax03400
]
HC341_04875 (ligA)
Enzymes [BR:
nax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HC341_04875 (ligA)
DNA replication proteins [BR:
nax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HC341_04875 (ligA)
DNA repair and recombination proteins [BR:
nax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HC341_04875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HC341_04875 (ligA)
MMR (mismatch excision repair)
DNA ligase
HC341_04875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HC341_04875 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
DUF6149
Motif
Other DBs
NCBI-ProteinID:
QIT54608
LinkDB
All DBs
Position
1060156..1062474
Genome browser
AA seq
772 aa
AA seq
DB search
MTTSPSAEDAAGRIARLREEIEEHNHRYYVLDEPVLSDAEYDAMLRELQGLEREHPELVR
PDSPTQRVGAAPADGFGEVTHGQPMLSLDNAFDADELREFDRRVRERLGVASVAYVGEPK
LDGLSLSLRYEDGLLVQAGTRGDGRVGEDITGNVRTVRSVPLRLRGERIPARLEVRGEVV
IRRQDFEQLNAGRLEQGERPFANPRNAAAGSLRQLDPQIAARRPLTLFAFGVGECSEPLG
EMHWQVLEQLGAWGFRVNREIRRLDGLDACLAYYNDLLGRRDSLDYEIDGVVFKVDDLAQ
RQTLGFTARAPRWAIASKLPAREATTRVRRILPSVGRTGAITPVAELEPVEVGGVTVSRA
TLHNLDELRRKDVREGDTVMVRRAGDVIPEIVSVNTEFRPVGVESWQMPERCPVCDSEVI
RPEGEVDYRCIGSLQCPAQLKESIRHFASRRALDIEGLGDKVAEQLVDTGLVQELADVFR
LDRQRLLGLEGFAEVSAGNLVAAIEARRQVPLERLLYGIGIPGVGADTARLLADQVGDMD
YIRRAPAVLFSLIPGVGRSMGEEIHTFFTDEANARGVDRLLREIELVSENGFSPDYVASL
TAGEIVAALGISGVGLGPKRARELGSKVTYLTDLMGLASQRLQAGGVDVQGLRQQLEERA
PLFEEVDALLIEKCLHWATDRGGAQIRGGGGSSSTLAGRSFVLTGTLESMTRDEAKARIE
AAGGKVTGSVSGKTDYVVAGEAAGSKRRRAEELGVAILDEAALLDLLREAAG
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatcgccgtcggcggaggacgcggcgggccgcatcgcgcggctccgcgaagag
atcgaggagcacaaccaccgctactacgtgctggacgagcccgtgctctcggacgccgag
tacgacgccatgctgcgggagttgcagggcctggagcgggagcaccccgagctggtgagg
ccggattcgcccacccagcgggtgggggcggcaccggctgacgggttcggcgaagtgacc
cacggtcagcccatgctgtccctggacaacgctttcgacgccgacgagctgcgggagttc
gatcggcgagtgcgtgagcgcctgggggttgcctccgtcgcctatgtgggggaaccgaag
ctggacgggctgtccctgagtctgcgctacgaagacggcctgctggtgcaggccggtacc
cgtggtgacggtcgcgtgggcgaggacatcaccggcaatgtccgcaccgtgcgcagcgta
ccgttgcgcctgcgcggtgagcgtattccggcgcggctggaagtgcgtggtgaagtggtc
atccggcggcaggacttcgagcagctcaacgccggtcgcctggagcagggcgaacgcccc
ttcgccaatccccgtaatgccgccgccggcagcctgcgccagctggacccgcagatcgcc
gcccggcgtccgctgacgctgttcgccttcggcgttggcgagtgcagtgagcccctgggg
gaaatgcactggcaggtgctggaacaactgggcgcctgggggtttcgggtgaaccgggaa
atccgccgcctggatggcctggatgcctgtctggcgtactacaacgacctgctggggcgg
cgggactcgctggattacgagatcgacggcgtggtcttcaaggtggacgatctcgcccag
cggcagaccctgggcttcaccgcccgggccccgcggtgggcgattgcctccaagctgccc
gcccgcgaggcgaccacccgcgtgcgccggattctaccctcggtgggccgcaccggtgcc
ataacgccggtggcggagctggagcccgtggaggtcggcggtgtcaccgtctcccgggca
acgctgcacaacctggacgagctgcgccgcaaggacgtccgcgagggtgacaccgtcatg
gtgcgccgggcgggcgacgtcattcccgagattgtcagcgtcaacacggagttccgacct
gttggtgtcgaatcctggcagatgcccgaacgctgcccggtgtgcgactccgaggtgatc
cgccccgagggcgaggtggactaccgctgcatcggcagcctgcagtgcccggcacagctc
aaggagtccatccgccatttcgcttcccgtcgcgccctggacatcgaagggctgggcgac
aaggtggcggagcagctggtggacacggggctggtgcaggagctggctgacgtgttccgg
ctggacaggcagcggttgctcggtctggagggattcgccgaggtctccgccggcaatctg
gtggccgccattgaggcgcgtcggcaggtgccgctggagcggttgctctacggtatcggc
atccctggtgtcggggcggatacagcgcgccttctcgcggatcaggtcggggatatggat
tatatccgcagggcgcccgccgttcttttctcactgattcccggtgttggtagatcgatg
ggtgaggagatccataccttcttcaccgacgaggcaaatgcccggggcgtggatcgtttg
ctcagagaaatcgaactggtcagcgagaacgggttttcgcctgattatgtggccagtctg
acagctggagagattgttgcggcgctcggcataagtggcgtcggccttggtcccaagcgt
gctcgagagttgggcagcaaggtcacttatctgacagacctgatgggtctggcgagtcag
cggcttcaggcgggcggcgtggacgtgcaggggttgcgtcagcaacttgaggaacgtgcg
ccgttgttcgaggaagtggatgcgctgttgatcgaaaagtgcctgcactgggcgactgac
cgaggcggggcgcagattcgcggcggtggcggtagctccagtacgctcgctggcaggagc
ttcgttcttaccggcacccttgaaagcatgacccgggacgaggccaaggcgcgcatcgaa
gcggcaggggggaaagtcacgggcagcgtgtccggcaagacggactacgtggtcgccggc
gaggcggcgggttccaaacggcgtcgggccgaggaactgggggtggccattctggacgag
gcggccctgctggacctgctgcgtgaggccgccgggtaa
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