Natrinema zhouii: HYG81_09700
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Entry
HYG81_09700 CDS
T08017
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nay
Natrinema zhouii
Pathway
nay03030
DNA replication
nay03410
Base excision repair
nay03420
Nucleotide excision repair
nay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG81_09700 (ligA)
03410 Base excision repair
HYG81_09700 (ligA)
03420 Nucleotide excision repair
HYG81_09700 (ligA)
03430 Mismatch repair
HYG81_09700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nay03032
]
HYG81_09700 (ligA)
03400 DNA repair and recombination proteins [BR:
nay03400
]
HYG81_09700 (ligA)
Enzymes [BR:
nay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYG81_09700 (ligA)
DNA replication proteins [BR:
nay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYG81_09700 (ligA)
DNA repair and recombination proteins [BR:
nay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYG81_09700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYG81_09700 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYG81_09700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG81_09700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QLK24399
UniProt:
A0A7D6GIF3
LinkDB
All DBs
Position
1977323..1979407
Genome browser
AA seq
694 aa
AA seq
DB search
MPVADEDADEDNPYLREPPTDFAPLEDLSEVEAREQVELLREAIREHDRRYYVESEPLIA
DRTYDALFARLRDLEEEFDLSHPDSPTRSVGGEPMEEFETVEHVEPMLSIDQSGEVEDVR
DFGNRVQREVGDVEYVCEPKFDGVSMEFVYEAGSLERAVTRGDGREGDDVTRNARTIGSV
PQQLHGDHPEFLAVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPAIVA
ERPLAVFYFDVLAASELEDTHRDELERFPEFGLRVNDRVEVVDDIEDAIEYRDRMLEARD
DLGYEIDGVVIKVDDRDAREELGQTARHDRWAFAYKFPARAEVTPIVDVALQVGRTGRLT
PVALLEPVDVGGVTVSRASLHNPEEIAEKNVNVGDTVRVQRAGDVIPYVEEVVKKGSEGH
YEMLDACPVCGSPVERDGPIAFCTGGLGCDAQLRRSIEYYASDDGLDLEGLGEKSVRQLV
DADLLESVADLYELEQDELLALEGWGGTSAENLLKEIEGSREPPLSDFISALGIPLVGPT
TARELAREFGTFDAFREAAETEPERLEGVDDVGDTVAETIHEFFVSEANAAVVDSVLEHV
SPQEVDIDTGGDELAGLTFVFTGSLEEMTRGDARELVETHGANATGSVSGNTDYLVAGDN
PGATKQEDARDEDVPILDESEFWTLLEDEGIDLG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcgccgacgaggacgcggacgaagacaacccgtatctccgagagccgccgacg
gacttcgccccgctcgaggacctctcggaggtcgaggcgcgcgagcaggtcgaactgctc
agggaggccattcgcgagcacgaccgccggtactacgtcgagagcgagccgctgatcgcc
gatcggacctacgacgcgctcttcgcccgactgcgcgacctcgaggaggaattcgatctc
tctcatcccgacagccccacccgaagcgtcggcggcgaaccgatggaggagttcgagacg
gtcgaacacgtcgaaccgatgctctcgatcgaccagagcggcgaggtcgaggacgtgcgg
gactttggcaatcgcgtacagcgggaggtcggagacgtcgaatacgtctgcgagcccaag
ttcgacggcgtctccatggagttcgtctacgaagcgggcagcctcgagcgcgccgtgact
cgcggcgacggccgcgaaggggacgacgtcacgcgcaacgcgcgtacgatcggctccgtg
ccacagcaactccacggcgaccaccccgagttcctcgcggtgcgcggcgaggtctacatg
cccaaagacgcctttcaggcgcacaaccgcgagcgtatcgagcgcggcgaggagcccttc
gccaatccgcgcaacgctaccgctggaaccatccgccaactcgatcccgcgatcgtcgcc
gagcgcccgctcgcggtcttctacttcgacgtgctcgctgccagcgaactcgaggacacc
caccgggacgaactcgagcgcttccccgagttcggtctgcgggtgaacgaccgcgtggag
gtggtggacgacatcgaggacgcgatcgagtaccgcgaccgcatgctcgaggcccgcgac
gacctgggctacgagatcgacggcgtcgtgatcaaggtcgacgatcgagacgcccgcgag
gaactcggacagacggcgcgccacgaccgctgggccttcgcctacaagttccccgcccgc
gcggaggtgacgccgatcgtcgacgtcgcgctccaggtcggtcggacgggccgactgacg
cccgtcgccttgctcgagccggtcgacgtcggcggcgtgacggtgtcgcgggcgagcctg
cacaaccccgaggagatcgccgagaagaacgtcaacgtcggggacacggtccgcgtccag
cgcgcgggcgacgtgatcccctacgtcgaggaggtcgtcaaaaaagggagcgagggacac
tacgagatgctcgacgcgtgccccgtctgtggcagccccgtcgagcgcgacggcccgatc
gccttctgtaccggcgggctgggctgtgacgcccaactccggcgctcgatcgagtactac
gcgagcgacgacggccttgacctcgagggactaggcgagaagagcgtccgccaactggtc
gatgccgacctcctcgagtccgttgcggacctctacgaactcgagcaggacgaactgttg
gcgctcgagggctggggcgggaccagcgccgagaacctcctcaaggagattgagggcagt
cgcgagccgccgctttccgacttcatctccgcgctcggcatccccctcgtcggtccgacg
acggcccgcgaactcgcccgcgagttcggcaccttcgacgcgttccgcgaggccgccgaa
accgagcccgagcgactcgagggcgtcgacgacgtcggtgacaccgtcgccgagacgatc
cacgagttcttcgtgagcgaggcgaacgccgccgtcgtcgatagcgtgctcgagcacgtc
tccccgcaggaagtcgacatcgacaccggcggcgacgaactcgcgggactgaccttcgtc
ttcacgggctcgctcgaggagatgaccagaggcgacgcgcgggaactcgtcgagacccac
ggcgcgaacgcgacgggaagcgtctctggcaatacggactacctcgtcgccggcgacaat
ccgggcgcgacgaagcaagaggacgcccgagacgaagacgtgccgatcctcgacgaatcc
gaattctggacgctgctcgaggacgaagggatcgacctcgggtag
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