Aquella oligotrophica: CUN60_11775
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Entry
CUN60_11775 CDS
T05482
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nba
Aquella oligotrophica
Pathway
nba03030
DNA replication
nba03410
Base excision repair
nba03420
Nucleotide excision repair
nba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CUN60_11775 (ligA)
03410 Base excision repair
CUN60_11775 (ligA)
03420 Nucleotide excision repair
CUN60_11775 (ligA)
03430 Mismatch repair
CUN60_11775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nba03032
]
CUN60_11775 (ligA)
03400 DNA repair and recombination proteins [BR:
nba03400
]
CUN60_11775 (ligA)
Enzymes [BR:
nba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CUN60_11775 (ligA)
DNA replication proteins [BR:
nba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CUN60_11775 (ligA)
DNA repair and recombination proteins [BR:
nba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CUN60_11775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CUN60_11775 (ligA)
MMR (mismatch excision repair)
DNA ligase
CUN60_11775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CUN60_11775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AUR52944
UniProt:
A0A2I7N901
LinkDB
All DBs
Position
complement(2579231..2581324)
Genome browser
AA seq
697 aa
AA seq
DB search
MDLFTVNENEITVGAKISQLTSDLNKFNLYYHTYDQSLISDEEYDRLFKELQELELKYPD
LVQPDTPTQRVGGRVLDGFSQITHELPMLSLSNVFSVMNEVESSLRHKELFQFAERVDKE
LGVGIDQINFVAMPKFDGVAISLIYENGVLTKAATRGDGYTGEDVTQNVKTVRNIPLSFT
NDLTRSEIIEVRGEILILTEDFIKLNVEQQQKGEKIYANPRNLAAGTIRQLDTSMTALRP
LRFFAYSIARCSDEVKCNTFYEELELLKKLGFTISNDCRLLSGIKELVIYYEEMLTKRNL
LEFGIDGVVYKINSIAEQKRLGFVSRAPRFAIAHKFPAEEVESEIINIEVQVGRTGALTP
VARIKPVNVAGVVVTNATLHNQEEIHRKDIRIGDKVIVRRAGDVIPEIVRSIPEARTREL
DVFHMPLSCPACGSHLVQESGETIIRCSAGLYCIAQKKQAITHFASKLAFNIDGLGEKIV
EQLVDARLINSIPDIFRLTEIQLISLERFAAKSARNLVEAINNSKNTTLPRLIYALGIRH
VGEASAKDLAKAFGSIDKLLRATKEELMQVNDIGEVVAESILNFFAEEHNCIVIDELKQL
GVNYPELAAKNLFNPQVTGKTYVITGSFVNHKRDEIKARLEEFGAKVAGSVSKKTDYVIV
GEDAGSKLEKARELGVTLIDEERLGTLLAELDGSKTG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttactgtgaatgagaatgaaataacagttggtgcaaagattagccagtta
acctcagatttaaataaatttaacttgtattatcatacttatgaccaatctctaattagt
gatgaagaatatgatcgtctatttaaagagttacaagaacttgagcttaaatatcctgat
ctagtgcagccagataccccaactcagcgtgttggtggtagagttttggatggttttagt
caaataacacatgaattacccatgctttctttgtcaaatgtattttcagtgatgaatgaa
gtagaatcatcattacgccataaagaattatttcaatttgcagaacgggttgataaagaa
ttgggtgttggtattgatcaaattaattttgtggctatgccaaaatttgatggggtagca
attagtcttatctatgaaaatggagttctaaccaaagcagcaactcgcggtgatggttac
actggcgaggatgttacccaaaatgtaaaaacagtacgtaatattccactttcttttaca
aatgatcttacccgatctgagataattgaagtgcgtggtgaaatattgattctaacagaa
gattttatcaaattaaatgttgaacagcagcagaagggcgaaaagatttatgcaaatccg
cgaaatcttgcagcaggaacgatacgtcagctagatactagtatgacggctctgcgacca
ttgcgcttttttgcctactcaattgctagatgtagtgatgaggtaaagtgtaatactttt
tatgaagagctggagctacttaaaaagcttgggtttacaattagtaacgattgccgatta
ttatctggtataaaagaattggttatctactatgaggaaatgcttactaaaaggaatctc
cttgaatttggcattgatggtgtagtttataagattaatagtattgctgaacagaaaaga
ttgggctttgtttcacgtgcaccccgatttgctattgcacataaatttccagctgaagag
gttgagtcagaaattataaatattgaggttcaggttggacgcactggggcattaactccg
gtggcaagaataaaacctgtcaatgtggctggcgtagtcgtcactaacgcaactcttcat
aatcaagaagaaattcatcgcaaggatattcgtattggcgataaagtaattgttagacga
gcaggagatgtaatccctgaaattgttagaagtatcccagaagcgagaactcgtgagctt
gatgtgtttcacatgccattaagttgtccggcatgtggttcacatctagtgcaagagtca
ggcgaaacaattattcgctgttcagcgggattatattgtatagcgcaaaagaagcaggcg
ataacccattttgctagtaagttggcatttaatattgatgggctcggcgaaaaaattgtt
gagcaattggttgatgccaggttaattaactccattcccgatatttttcgtctgactgag
attcaattaattagccttgaacgatttgccgcaaaaagcgcaaggaaccttgttgaagcg
attaataatagtaagaatactacattgcctaggctaatttacgcgctaggaattcgtcat
gtaggagaagcctcagctaaagatctggcaaaagcatttggctcgatagataaactactg
cgggcgacaaaagaagagttgatgcaagtaaatgatattggtgaggttgtagccgaatca
attttgaacttctttgcggaggagcataattgcattgtcatcgatgaattaaaacaattg
ggggttaactatcctgagcttgctgctaaaaatctttttaacccacaggtaactggcaaa
acatatgttattactgggagttttgttaatcataaacgtgatgaaattaaggcaagactg
gaagagtttggagctaaagttgcaggcagtgtttctaaaaaaactgattatgtgattgta
ggagaagatgccgggagcaagcttgaaaaggcacgagaattgggcgttacgctaatagat
gaagaaaggctagggacacttcttgcggagctggatggcagcaaaacaggataa
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